BAC Information

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BAC

Clone NameMSMg01-058K05
Chromosome18 (Build37)
Map Location 85,692,713 - 85,693,252
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058K05.T7 (MSMg01no058_k05.b1)MSMg01-058K05.TJ (MSMg01no058_k05.g1)
ACCAG285506AG285507
length687695
length of high quality
(start - end)
537 (64 - 600)531 (82 - 612)
definitionCHROMAT_FILE: MSMg01no058_k05.b1 PHD_FILE: MSMg01no058_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:56 2005CHROMAT_FILE: MSMg01no058_k05.g1 PHD_FILE: MSMg01no058_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCCGTAAACGATCACTATTCCAAGAGGAGCCGCGGAATT
CTTAGCCATGCGAGTAAGTATTCAAAACAAAGCAGTTAAGAGAGCAACAA
TGGCAGACAGGTCTTCTGGACAGAAATATGTTTTTATGTTGTTAATGAGA
TATGGGTAGGCATCTTTTGTGGATCCAGAGCACAGACTTCAAGGCTCCTA
GTGGGTTGGCAGCTGCAAATCCAGCATTGCTGTTCCTTCCTAATAACTGT
TTCTGGAACGTTGGCTAAATGAATGACTTACTTCATCAATAAATCAGGCA
CAATAACAATATCTGAACCCCTGTGCTTATTTATCCACTGTGCCCAAATA
CATAAAGATTAAGCACCACTACCAAAACCAGCCCATGGGTAGCAACACTC
AGGAAGAGAGCCGGAGGAATTTTCAGCTGTTTCTCAGAAAAAATGTATGG
AAAAAAAAAACAGACATTAAAGGTCCTCTTGGAATGGTATTAATATTTAA
GCATTGGGGTGATGTTCAATAATTTTCCCCCATAATTCACATTGTGGCAG
GAAAAGGAAATAAAAGTTGGAGTGTCATTTGAGTGCCTGGTTGATTTGAT
CCTAACCAGAGGAAAAAAGGTTATGTTACAGAAAAATAATCACAGTTGAA
GCCATGAAAGACCAGGCATACAAGTGGAAAGTATCTC
ACCCCCCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATAATGAGGCAATAGGA
CTCCCACTAGACAACAGGAACTAACAAGTGGAATAAGCCCTGTTACGGGA
ATGAGTTACATCATTTGAAGGTGCTGACCAGTGAGGTTACAAGAAGCCTA
ACCAATATAGGCTATTGTAAATGTTCAGAAGTGTTCTTCAGAACTTCACA
ATGAGACCCCATGGCTACAGTCATCATATACTTAAGTCATACAACTTGGA
ACAATCAAGCTGGTAAGGTCTTGGGTACTTCGTCCTACTAGCTAACTTTT
CATGGTGCTGCTGGGTGCTGTGCATGCTAGCAGAAGGAAAAAGAGTTATC
CAGATGTGAATCTTGTAAGCTACAATAAAAACTACATTGGCAAGAAATGC
CTGCAGGTTCAATTAAAGCACAACCATCTTGGGAGTAAACAAACACTTTT
TAAAGTGGATTTAAGGTGCTCTCCACAAGATAAAACCCATACCTTGTGCC
ATTATTAGATTAAGAACTTATGACTGTACAAGTCAAAAGGCCTACCAGAA
AATTTATTACAATTATTCTGGCAAATGGACAGAGAATGAAACCAAAATGT
AATGATTTATCATTATACCTATAGAATAAGGCACCTCTCAGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_k05.b1 MSMg01no058_k05.b1 CHROMAT_FILE:
MSMg01no058_k05.b1 PHD_FILE: MSMg01no058_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:56 2005
         (537 letters)



>mm_chr18_85692513_85693452
          Length = 940

 Score = 1002 bits (518), Expect = 0.0
 Identities = 534/540 (98%), Gaps = 3/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaagtattcaaaacaaagcagttaagagagcaacaatggcagacaggtcttctggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaagtattcaaaacaaagcagttaagagagcaacaatggcagacaggtcttctggacag 260

                                                                       
Query: 61  aaatatgtttttatgttgttaatgagatatgggtaggcatcttttgtggatccagagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatgtttttatgttgttaatgagatatgggtaggcatcttttgtggatccagagcac 320

                                                                       
Query: 121 agacttcaaggctcctagtgggttggcagctgcaaatccagcattgctgttccttcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacttcaaggctcctagtgggttggcagctgcaaatccagcattgctgttccttcctaa 380

                                                                       
Query: 181 taactgtttctggaacgttggctaaatgaatgacttacttcatcaataaatcaggcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taactgtttctggaacgttggctaaatgaatgacttacttcatcaataaatcaggcacaa 440

                                                                       
Query: 241 taacaatatctgaacccctgtgcttatttatccactgtgcccaaatacataaagattaag 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaatatctgagcccctgtgcttatttatccactgtgcccaaatacataaagattaag 500

                                                                       
Query: 301 caccactaccaaaaccagcccatgggtagcaacactcaggaagagagccggaggaatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccactaccaaaaccagcccatgggtagcaacactcaggaagagagccggaggaatttt 560

                                                                       
Query: 361 cagctgtttctcagaaaaaa-tgtatggaaaaaaaaaa--cagacattaaaggtcctctt 417
           |||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||
Sbjct: 561 cagctgtttctcagaaaaaaatgtaaggaaaaaaaaaaaacagacattaaaggtcctctt 620

                                                                       
Query: 418 ggaatggtattaatatttaagcattggggtgatgttcaataattttcccccataattcac 477
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ggaatggtattaatatttaagcattggagtgatgttcaataattttcccccataattcac 680

                                                                       
Query: 478 attgtggcaggaaaaggaaataaaagttggagtgtcatttgagtgcctggttgatttgat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgtggcaggaaaaggaaataaaagttggagtgtcatttgagtgcctggttgatttgat 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 940
Length adjustment: 10
Effective length of query: 527
Effective length of database: 930
Effective search space:   490110
Effective search space used:   490110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)