Query= MSMg01no059_c24.b1 MSMg01no059_c24.b1 CHROMAT_FILE:
MSMg01no059_c24.b1 PHD_FILE: MSMg01no059_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:38 2005
(575 letters)
>mm_chr18_61197979_61198953
Length = 975
Score = 1089 bits (563), Expect = 0.0
Identities = 572/575 (99%)
Strand = Plus / Plus
Query: 1 catcagtcggggcgagtagacaagggcagtgtagtccagtggtcagtgtgcgccaaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagtcggggcgagtagacaagggcagtgtagtccagtggtcagtgtgcgccaaggcc 260
Query: 61 ttagggggcgaggaatgtgtgttcccctagaactgataacccagccctgagggagaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagggggcgaggaatgtgtgttcccctagaactgataacccagccctgagggagaagca 320
Query: 121 ggaagctgatctgagaacacacccacccctcctaacccctgcaccaggagagggaagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagctgatctgagaacacacccacccctcctaacccctgcaccaggagagggaagctg 380
Query: 181 ggcagggatcctaagtgactgagacatagccaggatttggtagtggcttagagatggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcagggatcctaagtgactgagacatagccaggatttggtagtggcttagagatggatg 440
Query: 241 ggtcagggtggcatgtgaccttataggaaattcagaagcctgctgcagagacgtttctca 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcagggtggcaggggaccttataggaaattcagaagcctgctgcagagacgtttctca 500
Query: 301 atgctgtaccctcaaagggtggacataccgccccccaccccccatctacaggtgctcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctgtaccctcaaagggtggacataccgccccccaccccccatctacaggtgctcctg 560
Query: 361 ggctgcaccaccctttctgagtatccgctgtctctctctgagatggcacactggtttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgcaccaccctttctgagtatccgctgtctctctctgagatggcacactggtttgtg 620
Query: 421 acaatggcacttccacacactgagcaggtgctgagagtgacatctcacggccagcgtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatggcacttccacacactgagcaggtgctgagagtgacatctcacggccagcgtgtg 680
Query: 481 tcacctccgctcatcctgaccaccatccagggaaatagaagcgattgctacccccatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacctccgctcatcctgaccaccatccagggaaatagaagcgattgctacccccatttt 740
Query: 541 ttcccccagattaacaaatgtgttcagagaggtaa 575
|| ||||||||||||||||||||||||||||||||
Sbjct: 741 tttccccagattaacaaatgtgttcagagaggtaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_c24.g1 MSMg01no059_c24.g1 CHROMAT_FILE:
MSMg01no059_c24.g1 PHD_FILE: MSMg01no059_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:38 2005
(518 letters)
>mm_chr18_61353186_61354108
Length = 923
Score = 654 bits (338), Expect = 0.0
Identities = 400/430 (93%), Gaps = 21/430 (4%)
Strand = Plus / Minus
Query: 54 tcttggactcttaattctggtggtgttttaatttgaacttgggctttaaattaagttgaa 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tcttggactcttaattctggtggtgttttaatttgaacttgggctttaaattaagttgaa 864
Query: 114 gagaggatgaatttcgccgggcgtggtggtgcacgcctttaatcccag--catgt-ggga 170
||||||||||||||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 863 gagaggatgaatttcgccgggcgtggtggtgcacgcctttaatcctagtac---tcggga 807
Query: 171 ggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccagg 230
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 806 gacagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttccagg 747
Query: 231 acagccaggactacacagataaaccctgtctcg-aaaaaaacaaaacaaaacaaaacaaa 289
||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||
Sbjct: 746 acagccaggactacacagagaaaccctgtctcgaaaaaaaacaaaacaaaac-aaacaaa 688
Query: 290 acaaaaaa--------gatgaatttctacttagactcaaaatgggcacagtggcctgtga 341
| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaaaaaaaaagaaaggatgaatttctacttagactcaaaatgggcacagtggcctgtga 628
Query: 342 ggcactcgacttggaggctggggcaggaaaagacttcgaggccaacctgagatagctggt 401
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 627 ggcacttgacttggaggctggggcaggaaaagactttgaggccaacctgagatagctgtt 568
Query: 402 gagaccttgccaaaagaagagaaaa-----ctagctagctgttggagacccatttgtcct 456
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 567 gagaccttgccaaaagaagagaaaagaaaactagctagctgttggagacccatttgtctt 508
Query: 457 ccaactcatt 466
||||||||||
Sbjct: 507 ccaactcatt 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 923
Length adjustment: 10
Effective length of query: 508
Effective length of database: 913
Effective search space: 463804
Effective search space used: 463804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
