BAC Information

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BAC

Clone NameMSMg01-059H05
Chromosome18 (Build37)
Map Location 23,961,949 - 23,962,446
singlet/doubletsinglet
Overlap genenone
Upstream geneNol4, LOC100040579, LOC665797, Dtna
Downstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H05.T7 (MSMg01no059_h05.b1)MSMg01-059H05.TJ (MSMg01no059_h05.g1)
ACCAG286126AG286127
length702704
length of high quality
(start - end)
498 (68 - 565)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no059_h05.b1 PHD_FILE: MSMg01no059_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:57 2005CHROMAT_FILE: MSMg01no059_h05.g1 PHD_FILE: MSMg01no059_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCGGCGGA
ATTCTTTTGCATTACGCATTTAATTTGCAACGGTCGTCCTCACAGTATGG
TCTTAGAAGATGCAGCTTCCTCATGGGTTTCATTTTTCTGCTCCTTTTAA
GCAGGAGGCAGCCGCTTTGGAGCGTAGAGGACGCGGGAAAACTTAACCCC
TTTAGTCCCCCACCTTTTCTAGAAGCTAACGACCAGGTCTTTGTGGGTTT
GTCTTGCAACCTGACCACGTTTCCTGTCCGAGGCCTTGGAGCTTCCCCAG
GCCTGGGTATGGGTCCTTTTGTGTGTACAGCTACAGGGACAGCCTGGCCC
AAGAGGAAGCAGCTAGAGGAAGAGCCATTCGAATTCGGGCGCAGGGCGGG
TCCATGCCAGATGCCGGCCAGCCCCTTGCTCTGCAGCCTGCAGCCCGGGG
CGCTCTTGCTGCGCTGCTCTGCGTGAACCTAGGCAAGCTGACGAGTTAGC
GGGTTGCTATGGTGACAGATAGCCACGTGACCAGCCACAGCCGCTGCTGC
AGGCGCCCTGACGTGGGAGGGCGTGGCTTTCGAGGGCGTGGCCTTTGGAG
GGCGGGGCCGGGCACAGAGCTGGAGCAGAGCGCGGCTGCAGGGTGAGCAT
CAAGCAGCGGGGAGACACAACCCTCCGCCCCAGTCAGCCACCGGGTGTGT
TC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGTGGTGAAAAACCGTATAAATGTTG
TGACTGTGGAAAAGCTTTTGGGAGCAACACAGGGCTCATTAGGCATAGGA
GAATTCATACTGGAGAGAAACCTTATGGTTGTGATGAATGTGGGAGAGCC
TTCAGCCAATGTTCTACTCTTATTCAGCATAAGAAGATTCACAGTGGAGA
AAAACCTTATAGTTGTGATGAATGTGGGAAAGCCTTCATCCAGAGCTCTG
CCCTTATTCAGCATAAGAATATTCTCAGTGGAGACAAAAGCTATGAATGT
ACTGAATGTGGTAAGGCTTTTTGGACAAGTTATGTTCTTAGGGAACATCA
AAGAATCCACACTGGTGAGAAACCTTATAAATGTAATGAATGTGGAAAAT
CCTTTAATAGAAGCTCAGCACTCACTGTGCACCAGAGAACTCACTCTGGG
GAGAAACCTTATGAATGTAATGAATGCAGGACCATATTTAGGCATAGGTC
AGGTCTTGTGCAGCATCAGAGAACACATACCAGAGTTCAGCTCTAATGGT
CAGCGGCTGTACAATTGCGAAATGCTAGGAATTCACTTTGAATGTGAGAC
TCCACCATAGATATTAGAATTTCCTCGATGCCGGATTTTTGTCCTTTCTG
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h05.b1 MSMg01no059_h05.b1 CHROMAT_FILE:
MSMg01no059_h05.b1 PHD_FILE: MSMg01no059_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:57 2005
         (498 letters)



>mm_chr18_23961749_23962646
          Length = 898

 Score =  963 bits (498), Expect = 0.0
 Identities = 498/498 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaatttgcaacggtcgtcctcacagtatggtcttagaagatgcagcttcctcatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaatttgcaacggtcgtcctcacagtatggtcttagaagatgcagcttcctcatggg 260

                                                                       
Query: 61  tttcatttttctgctccttttaagcaggaggcagccgctttggagcgtagaggacgcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatttttctgctccttttaagcaggaggcagccgctttggagcgtagaggacgcggg 320

                                                                       
Query: 121 aaaacttaacccctttagtcccccaccttttctagaagctaacgaccaggtctttgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacttaacccctttagtcccccaccttttctagaagctaacgaccaggtctttgtggg 380

                                                                       
Query: 181 tttgtcttgcaacctgaccacgtttcctgtccgaggccttggagcttccccaggcctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtcttgcaacctgaccacgtttcctgtccgaggccttggagcttccccaggcctggg 440

                                                                       
Query: 241 tatgggtccttttgtgtgtacagctacagggacagcctggcccaagaggaagcagctaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgggtccttttgtgtgtacagctacagggacagcctggcccaagaggaagcagctaga 500

                                                                       
Query: 301 ggaagagccattcgaattcgggcgcagggcgggtccatgccagatgccggccagcccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagagccattcgaattcgggcgcagggcgggtccatgccagatgccggccagcccctt 560

                                                                       
Query: 361 gctctgcagcctgcagcccggggcgctcttgctgcgctgctctgcgtgaacctaggcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctgcagcctgcagcccggggcgctcttgctgcgctgctctgcgtgaacctaggcaag 620

                                                                       
Query: 421 ctgacgagttagcgggttgctatggtgacagatagccacgtgaccagccacagccgctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgacgagttagcgggttgctatggtgacagatagccacgtgaccagccacagccgctgc 680

                             
Query: 481 tgcaggcgccctgacgtg 498
           ||||||||||||||||||
Sbjct: 681 tgcaggcgccctgacgtg 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)