Query= MSMg01no059_n01.b1 MSMg01no059_n01.b1 CHROMAT_FILE:
MSMg01no059_n01.b1 PHD_FILE: MSMg01no059_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:24 2005
(605 letters)
>mm_chr18_52877345_52878349
Length = 1005
Score = 1100 bits (569), Expect = 0.0
Identities = 598/615 (97%), Gaps = 13/615 (2%)
Strand = Plus / Plus
Query: 4 gaattcactttgtgttccca-tatcttaagtgatttttacgtttttaagcttcgcatgcc 62
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcactttgtgttacaaatatcttaagtgatttttacgtttttaagcttcgcatgcc 250
Query: 63 cgcagtaactccaggctggctgccagatgaacttggctacgctaagctaagtggaatttg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cgcagtaactccaggctggctgccagatgaacttggctacgctaagctaagtggaatttg 310
Query: 123 gaaagcagggtttatgagcaagactttggtttattcaagagaagaaagtgacggaggagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaagcagggtttatgagcaagactttggtttattcaagagaagaaagtgacggaggagt 370
Query: 183 taaagtgaggggagacagagacagagtcagagacacagataagaagacagagacagacag 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 taaagtgaggggagacagagacagagtcagagacacagataggaagacagagacagacag 430
Query: 243 acagacagacagaca------------ttctttcatatttccaccttgtctttcacatat 290
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 acagacagacagacagacagacagacattctttcatatttccaccttgtctttcacatat 490
Query: 291 cctcctgcacaacccctctctgcttcggttgctctctttccacagttgttcttcagacag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctcctgcacaacccctctctgcttcggttgctctctttccacagttgttcttcagacag 550
Query: 351 cattgttttgaacgcccttccttcagtttgccctgagaataaacattgctttaagggact 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cattgttttgaacgcccttccttcagtttgccctgagaataaacattgctttaagggact 610
Query: 411 ctaggaggcaattccaaagtattagctccaatttcattttttacatggtaaaactttcac 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 611 ctaggaggcaattccaaagtattagctccaatttcattttttacacggtaaaactttcac 670
Query: 471 actatccttgagtttctgcctctctgcaaacatgacttatctgcagatgctgtctcccca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 actatccttgagtttctgcctctctgcaaacatgacttatctgcagatgctgtctcccca 730
Query: 531 tccacccccagctctcgtggctatcctgagccacgagtggagcctcacactgtactcagc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tccacccccagctctcgtggctatcctgagccacgagtggagcctcacactgtactcagc 790
Query: 591 ttctacaactccctg 605
|||||||||||||||
Sbjct: 791 ttctacaactccctg 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n01.g1 MSMg01no059_n01.g1 CHROMAT_FILE:
MSMg01no059_n01.g1 PHD_FILE: MSMg01no059_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:24 2005
(504 letters)
>mm_chr18_52975185_52976088
Length = 904
Score = 915 bits (473), Expect = 0.0
Identities = 497/505 (98%), Gaps = 2/505 (0%)
Strand = Plus / Minus
Query: 1 catttcaacagataagccttaaatttccccttctaatcctctgcaacgctggtccagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catttcaacagataagccttaaatttccccttctaatcctctgcaacgctggtccagctg 645
Query: 61 gtgctgccattcctcgcatgagctccgagtttcacagagtggaaacgtggcttttcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtgctgccattcctcgcatgagctccgagtttcacagagtggaaacgtggcttttcatct 585
Query: 121 ttatttcttccacttaattactgtcatcaaaaagtgctcaagattcttaaatctccagtg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttatttcttccacttaactactgtcatcaaaaagtgctcaagattcttaaatctccagtg 525
Query: 181 cagcctgtgagctgatttcataatgatataatgagccacaccgagaacctttgtggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cagcctgtgagctgatttcataatgatataatgagccacaccgagaacctttgtggtttt 465
Query: 241 agatctttgtacatcagtgggcaacagcacccattttaatctcctattcttgtccaattt 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 464 agatctttgtacatcagtgggcaacagcacccatattaatctcctattcttgtccaattt 405
Query: 301 ctactctatcacccatccttatcccagcatttatgtgacagatcatcgctagacttctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 404 ctactctatcacccatccttatcccagcatttatgtgacagatcatcgctagacttcgag 345
Query: 361 aaaacaggaaccccaagagtcctgtgaggatactcagagggggtcatgaagattaaaaga 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 344 aaaacaggaaccccaagagtcctgtgaggatattcagagggggtcatgaagattaaaaga 285
Query: 421 ggttcacactaatggctggaacaagtgactacct-ttatcactattctctggcccacctc 479
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 284 gattcacactaatggctggaacaagtgacta-ctgttatcactattctctggcccacctc 226
Query: 480 aattacacacacatagtgacccagc 504
||||||||||||| |||||||||||
Sbjct: 225 aattacacacacaaagtgacccagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
