BAC Information

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BAC

Clone NameMSMg01-060B03
Chromosome18 (Build37)
Map Location 54,921,835 - 54,922,438
singlet/doubletsinglet
Overlap geneEG545257
Upstream geneCsnk1g3, EG433184, LOC667360
Downstream geneLOC100042489, Zfp608, LOC100043089, LOC667401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B03.T7 (MSMg01no060_b03.b1)MSMg01-060B03.TJ (MSMg01no060_b03.g1)
ACCAG286601AG286602
length719727
length of high quality
(start - end)
608 (36 - 643)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no060_b03.b1 PHD_FILE: MSMg01no060_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005CHROMAT_FILE: MSMg01no060_b03.g1 PHD_FILE: MSMg01no060_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCATTTG
GTCTCCCGGATTCGGAGTATTTCTGTCCATGGTAGGTGGAGAGAGCACTG
CAGAGTTAATGGTGGTAGAAACTTGTAGAGGCTCCTAGGTCCAGGAAAAG
AGTGTAGGGCTCAACTCCAAGCTGGTATGCCCAGAGTCAGAGAGCCCTGT
CCTGTGGTTTGCCACTTTCAGCATGAATCATAGGTCTTAAATGGGTATTT
CTTCTGAAATGTTCTCTTTTTCCTTCCTCCTTCCATGTGCTCCGCCCACG
AAGTGTCAGTAAAGTTCCCAAACTTGCTCTCATCTTCCCAGTCATCTCTC
CTGAATATTCTGTGTTTGTCAGCTCCACGCCTACAATTTACCACCGTTAG
CCTGGTGTCCATTGGATAAGTAGGGAATGGGCTTGCTTCTGTGACACGAG
GTAGTTTTGAACAGAGAAGGAAAAGAAATGTTTTCTCCGTATACAGAAAC
AGGCTGGAGAAAGAGAAAAATGGAGAGTCTGGACTTTGAATTAGCCTGTT
AGGATTTTAAGTATTAACCTGGTTCAGTAGAATAAATAATACATAGCTAA
GTTTCTGTTTAATATTTTGAGCCAGAAATGGTCTAGGACTCAGAAGACAG
CCCAAGCTGGATTCAAATTCTCAAGTTTTTCTCTACTTCCTGATTTCTGG
GAGTCTGGTATAGACCTAT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTGGGTTTTGATCTTTGAGAC
ATTTTTTTTCTCAGTATAGCCCTGGAACTCACTTTGTAGATCAGCCTGGC
CTCTGTCTCAGAGATCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC
TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC
TGCCTCTGCCTCTAGGATTAAACCATGCCTGAACACAATAAATACTGTTT
AAAAAAAAAAAAACATGAGATAAACTTCCTTCACAACGTATAAAGGTATA
ATTAGAAAACTTAACCTTTAAAAATAGTCTTAGAAAATCCTTTAAAAATT
TCATATATTAAAAAATGTTTCTGAAAGTCACCAATTGGTTTCTAAATAGC
CATTTTGAGTAGTGAATCTTGAGAACATTTTTAGGAAATATTTGCAGAAA
ATATTGGTGCCATTTAGATGACTTTGGGAGGTTCTCTATTGTTAGCTTCG
CTCTTTTAAATCAAATGCCTATCTTTTGAAGTTTTCTTCCACTGGTATAG
GATTTTAAGTCTGTATCTACTCAATGACCTGAATGAAATACTATCGATAG
ACGGCGAAAGGTGTTTTGGTATTTCTGATGTTTGTATGTCAGCACCTTAA
AGGAGAGCATTTCTCTTTTCAGCCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b03.b1 MSMg01no060_b03.b1 CHROMAT_FILE:
MSMg01no060_b03.b1 PHD_FILE: MSMg01no060_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:43 2005
         (608 letters)



>mm_chr18_54921631_54922638
          Length = 1008

 Score = 1137 bits (588), Expect = 0.0
 Identities = 600/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttggtctcccggattcggagtatttctgtccatggtaggtggagagagcact 64
           |||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgggctcatggattcagagtatttctgtccatggtaggtggagagagcact 264

                                                                       
Query: 65  gcagagttaatggtggtagaaacttgtagaggctcctaggtccaggaaaagagtgtaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagagttaatggtggtagaaacttgtagaggctcctaggtccaggaaaagagtgtaggg 324

                                                                       
Query: 125 ctcaactccaagctggtatgcccagagtcagagagccctgtcctgtggtttgccactttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcaactccaagctggtatgcccagagtcagagagccctgtcctgtggtttgccactttc 384

                                                                       
Query: 185 agcatgaatcataggtcttaaatgggtatttcttctgaaatgttctctttttccttcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcatgaatcataggtcttaaatgggtatttcttctgaaatgttctctttttccttcctc 444

                                                                       
Query: 245 cttccatgtgctccgcccacgaagtgtcagtaaagttcccaaacttgctctcatcttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttccatgtgctccgcccacgaagtgtcagtaaagttcccaaacttgctctcatcttccc 504

                                                                       
Query: 305 agtcatctctcctgaatattctgtgtttgtcagctccacgcctacaatttaccaccgtta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcatctctcctgaatattctgtgtttgtcagctccacgcctacaatttaccaccgtta 564

                                                                       
Query: 365 gcctggtgtccattggataagtagggaatgggcttgcttctgtgacacgaggtagttttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcctggtgtccattggataagtagggaatgggcttgcttctgtgacacgaggtagttttg 624

                                                                       
Query: 425 aacagagaaggaaaagaaatgttttctccgtatacagaaacaggctggagaaagagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacagagaaggaaaagaaatgttttctccgtatacagaaacaggctggagaaagagaaaa 684

                                                                       
Query: 485 atggagagtctggactttgaattagcctgttaggattttaagtattaacctggttcagta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atggagagtctggactttgaattagcctgttaggattttaagtattaacctggttcagta 744

                                                                       
Query: 545 gaataaataatacatagctaagtttctgtttaatattttgagccagaaatggtctaggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaataaataatacatagctaagtttctgtttaatattttgagccagaaatggtctaggac 804

               
Query: 605 tcag 608
           ||||
Sbjct: 805 tcag 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)