BAC Information

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BAC

Clone NameMSMg01-060F02
Chromosome18 (Build37)
Map Location 83,204,703 - 83,204,945
singlet/doubletsinglet
Overlap genenone
Upstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
Downstream gene4921531P14Rik, LOC665284, Tshz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060F02.T7 (MSMg01no060_f02.b1)MSMg01-060F02.TJ (MSMg01no060_f02.g1)
ACCAG286789AG286790
length723714
length of high quality
(start - end)
245 (75 - 319)---
definitionCHROMAT_FILE: MSMg01no060_f02.b1 PHD_FILE: MSMg01no060_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:01 2005CHROMAT_FILE: MSMg01no060_f02.g1 PHD_FILE: MSMg01no060_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAACGGAGGNGCGG
AATTCTTGCTCTTGCGACATAAGAGCTTTTCTGTGCACCCCTGCCCTTGC
ACCTTGTCTCTCATGAGCACATTTGGGGGCCAATTCATTCCATAGGAAAG
TTGACGGTTCTTATTTCTTTTCAAACAAATTGTTCTAACAGCCACTTTTT
GCACAAGGAAGCAAACAGACACAGCAGCCGGCGCACATTCTCAGGGTGTA
TGTTCTTGGATTTGGAAATTATAGTTTAGTGTATGCTTTTCCATGCCAAG
TTTAGACCCTCAGCAGATATCACTGCTTCTACACAGGACTGTAGTGGGAT
AATGCTATTTTTAGAGGCCCCTGGTGTCCCAGGTCCCGTACATGGTCTGT
CCTGGAGGCTCTTTTGCTTCTGAACGCTGATTTGCCAAGTGGTTTGAAAA
CACCCAGTTGCTGCCACCTTGGGTGGTAAGTAAGAGTCGGGTCCTGGTAA
CTCGACCACAGCTGACTTATTCGCTCAGATGTTTTTTCTGCTTTTCATGG
ACATGTGTACTTTTCTTTTTTCTTCTTCATTTTTTTTTTAATCTTGGTGG
ATGCTGTGACTTCCCACAAGTGTGATGCGGGGTTGTAAAATCCTAGGCAG
TGGGAAAATCCTCATGCTGTTTGCACTTGTTTTGAAATATCGAATTTGAC
TCTGCCCCAGGAGACCCCCAGGT
ACTGATAGCGCGAGGCCCGGNGGACGCCCGCCTTCTGACTCTGCNTTAAN
NANNNCNGGTTGCCCGCACCCGCACGGANGGNNGGAGAGAGAGGGGGANN
GGGNAANNANANATTTTAGCCCCGGACCCCCGCAACCCACGGGGAAAGCC
AGCCGGCCAAAGGCAGAGGGACAGAACCGAGAGCCCCATAGTCCCAGAGA
ACTTCACGAGAGAGCTCCAGGGTCAACTTTGCTGGCAACATCCTACACTG
TTTTGCTCCTGACAACCCGAGTTTGATTAACTGTTCTGTTATTGCGGCCC
CAGCGAGCGAGACTTTTTATGCTTTTGCACCCCCAAACCCCCCCCCCCNC
CGCACCTTTTTTTTTTCCCCCCCCCCCCCCCCAGGGGTGGTTCTTTCCCA
GTATTATTTCTTCTTCCCCCTCCAGATAGTGTTGGAGCAAATCCCTCCTT
GTCTCCCCCCCCCCCGCACCCTCCCCCACTACACCCTTACACCCCGGGTC
GTCTCGCCCTTCGCCGCTCCTACACGCTACTCACTTTTACCCGTACCCTA
ACAACCCTACTTTACGCCATTCTCTGCCCCTCCCTGTTGCCGTTCGCTTT
CGCCTCGCTTTTCCCCAATCGTCCCCCCCCCTTCTCCAACATTTGATTTT
CCACCCCGTTCCTGCACCCTGTATCTTTTTTTTCTCTCACCCTCGGCCCC
CCGTGCCACGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_f02.b1 MSMg01no060_f02.b1 CHROMAT_FILE:
MSMg01no060_f02.b1 PHD_FILE: MSMg01no060_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:01 2005
         (245 letters)



>mm_chr18_83204503_83205147
          Length = 645

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttttctgtgcacccctgcccttgcaccttgtctctcatgagcacatttgggggccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttttctgtgcacccctgcccttgcaccttgtctctcatgagcacatttgggggccaat 260

                                                                       
Query: 61  tcattccataggaaagttgacggttcttatttcttttcaaacaaattgttctaacagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattccataggaaagttgacggttcttatttcttttcaaacaaattgttctaacagcca 320

                                                                       
Query: 121 ctttttgcacaaggaagcaaacagacacagcagccggcgcacattctcagggtgtatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttgcacaaggaagcaaacagacacagcagccggcgcacattctcagggtgtatgtt 380

                                                                       
Query: 181 cttggatttggaaattatagtttagtgtatgcttttccatgccaagtttagaccctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggatttggaaattatagtttagtgtatgcttttccatgccaagtttagaccctcagc 440

              
Query: 241 aga 243
           |||
Sbjct: 441 aga 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)