BAC Information

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BAC

Clone NameMSMg01-060H05
Chromosome18 (Build37)
Map Location 70,066,463 - 70,215,325
singlet/doubletdoublet
Overlap geneCcdc68, Rab27b
Upstream geneLOC100043380, EG225681, Tcf4
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H05.T7 (MSMg01no060_h05.b1)MSMg01-060H05.TJ (MSMg01no060_h05.g1)
ACCAG286891AG286892
length702729
length of high quality
(start - end)		662 (41 - 702)119 (91 - 209)
definitionCHROMAT_FILE: MSMg01no060_h05.b1 PHD_FILE: MSMg01no060_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:11 2005CHROMAT_FILE: MSMg01no060_h05.g1 PHD_FILE: MSMg01no060_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,066,463 - 70,067,120)(70,215,207 - 70,215,325)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAGCTTCCCGGCCAGGAAGCAGATTTTTCAGATGGTGCTCTACAGCCAA
GTGCTTACCCTAATGTTTGGCAGTAGCAAGATACAAGATACAGCAGCTGG
CATAGGGGTCCTGATGCAAGGATTATGTATAAGGACCCCTAGCCCTACAA
GTATTAAGGGTTCTCTGGAAGTCTTCTAAGGACCACTTCCCCTTCCGTGG
CTCTTTCCTACCTCCTATTTCCTACTCTTTAGCCTTGGCCCTCAACTCCC
CATCTGCCCATCATTTCTGATGTTCTTCCCATCTTAGCCACTCATGAATT
GTTCCACTGTCAGACAGCTTGCTGCTCGACTCCTGTTAACCTAGCCCCCT
CTGTTGGAGCTGATTGGGACATTGGCCTTTGCTGAGACCCCTTGGTGCAT
GCTACCCATGCTGGAGCTGTTCTGCCCCTTGGCTACCACCATTCTTTCTG
TCTCTGTTGTCCCTTATACTGTGTGACCAGCTAATCCTGCACTGCTGAAA
GGAACCAAGAAAAGACCACAGGACAGAAGTCTTTGGGGGGCTGTTGCTTA
GAAGCCAGGGGAAAGAGCAAGGGTGAGTATCCCACAGCCAACTCCCCAAG
CAGGTTAGCAGCATCATTAAATGAGTCAATTGGAGTCCCAGGGGGCATTT
GG

CACATCCTTCACTCGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAACCTT
ATTTCTTTACAATCAATCGCTTTTCCATCCCTTTTTTTGAGTACAAAGAA
CTCACATCTTTAATTTTCTGGGACTGTTTTTGGTCTCCTTTTTCCCCCCA
CCATTTTAGGTGGCTTCTTGTTTTATTTTGCTGAGGATTTTCATCTTTGA
GCATCTTTAGTAAGTATATTTTCAATCTCCAGAGGTTTTGCGTTGCCATT
GCTTTCTATATAAATTTGTTATTTACCTCACTGAATGTAGAGTCAAAGGG
CCTATGCCCGACTCATAGCCAGCCCATCCTGAGACCTATCTGCATCCTCC
AGAACCGACGTCTGCACTCTTCCTGAGGCTGCACCAAGCCTATAACGTTA
CTTGTTTTGTATACCTGACTATGCAGAGCAAACTTCATATGGGAGCAATT
TGTGCACTCCGTCTTCGATCTACCCTTATATCGCACTGCCCGCCTTCCGA
ACTGCGTCAGAATACCCCTGCCTGCCAACCCCCTATACTTGGTTTTCGTT
TTGCCCTTCACCCTTTTCCCATTTTCCATTTACCCCCCTACCTTCCCCTC
CTTAATCAGTATCCCACCCTACACCTCTCTCTTCTTTCACGTCCCTTCTC
CCGACCATCTTATCATCATTTCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h05.b1 MSMg01no060_h05.b1 CHROMAT_FILE:
MSMg01no060_h05.b1 PHD_FILE: MSMg01no060_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
         (662 letters)



>mm_chr18_70066259_70067320
          Length = 1062

 Score = 1164 bits (602), Expect = 0.0
 Identities = 644/658 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagcttcccggccaggaagcagatttttcagatggtgctctacagccaagtgc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcttcctggccaggaagcagatttttcagatggtgctctacagccaagtgc 264

                                                                       
Query: 65  ttaccctaatgtttggcagtagcaagatacaagatacagcagctggcataggggtcctga 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaccctaacgtttggcagtagcaagatacaagatacagcagctggcataggggtcctga 324

                                                                       
Query: 125 tgcaaggattatgtataaggacccctagccctacaagtattaagggttctctggaagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcaaggattatgtataaggacccctagccctacaagtattaagggttctctggaagtct 384

                                                                       
Query: 185 tctaaggaccacttccccttccgtggctctttcctacctcctatttcctactctttagcc 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 tctaaggaccacttccccttccgtggctctttcctacctcctctttcctactctttagcc 444

                                                                       
Query: 245 ttggccctcaactccccatctgcccatcatttctgatgttcttcccatcttagccactca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 ttggccctcaactccccatctgcccatcatttctgatgttcttcccatcttagccgctca 504

                                                                       
Query: 305 tgaattgttccactgtcagacagcttgctgctcgactcctgttaacctagccccctctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 tgaattgttccactgtcagacagcttgctgctcgactcctgttaacctaaccccctctgt 564

                                                                       
Query: 365 tggagctgattgggacattggcctttgctgagaccccttggtgcatgctacccatgctgg 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaactgattgggacattggcctttgctgagaccccttggtgcatgctacccatgctgg 624

                                                                       
Query: 425 agctgttctgccccttggctaccaccattctttctgtctctgttgtcccttatactgtgt 484
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 625 agctgttctgccccttggctaccaccattctttctgtctctgctgtcccttacactgtgt 684

                                                                       
Query: 485 gaccagctaatcctgcactgctgaaaggaaccaagaaaagaccacaggacagaagtcttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaccagctaatcctgcactgctgaaaggaaccaagaaaagaccacaggacagaagtcttt 744

                                                                       
Query: 545 ggggggctgttgcttagaagccaggggaaagagcaagggtgagtatcccacagccaactc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggggggctgttgcttagaagccaggggaaagagcaagggtgagtatcccacagccaactc 804

                                                                     
Query: 605 cccaagcaggttagcagcatcattaaatgagtcaattggagtcccagggggcatttgg 662
            |||||| ||| ||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct: 805 tccaagcgggtgagcagcaccattaaatgagtcaattggaggctcagggggcatttgg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no060_h05.g1 MSMg01no060_h05.g1 CHROMAT_FILE:
MSMg01no060_h05.g1 PHD_FILE: MSMg01no060_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
         (119 letters)



>mm_chr18_70215007_70215525
          Length = 519

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaaccttatttctttacaatcaatcgcttttccatccctttttttgagtacaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 ttaaaaccttatttctttacaatcaatcgcttttccatccctttttttgagtagaaagaa 260

                                                                      
Query: 61  ctcacatctttaattttctgggactgtttttggtctcctttttccccccaccattttag 119
           ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 259 ctcacatctttaattttctgggattgtttttggtcccctttttccccccaccattttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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