BAC Information

Click to search

BAC

Clone NameMSMg01-060J07
Chromosome18 (Build37)
Map Location 75,284,346 - 75,284,947
singlet/doubletsinglet
Overlap geneDym
Upstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneLOC628356, EG667777, Smad7, Gm672, Zbtb7c, 4833419G08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J07.T7 (MSMg01no060_j07.b1)MSMg01-060J07.TJ (MSMg01no060_j07.g1)
ACCAG286991AG286992
length728802
length of high quality
(start - end)
607 (35 - 641)---
definitionCHROMAT_FILE: MSMg01no060_j07.b1 PHD_FILE: MSMg01no060_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:20 2005CHROMAT_FILE: MSMg01no060_j07.g1 PHD_FILE: MSMg01no060_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTTAT
ATATTCCTGATCTTGTGCTTTTTTCCATTGCAGTCTGTTAATATAGTGAA
ATACACTGATGAATCTTTTCATTGCTATTAAAGCAGTCCTCCCATTCCTG
GGATGACACCATGATTGGTCATGATGTGTTAATTTGTAGTATGTATCCAT
ATACTGTTTGGTTAATCTTTGAGTTTTGTTAGCTGTGTCCTAAGGAACTT
GCATACTTTTTCTAAGATAACCTTTATTGCCTTGGTACTCGCTGGCAGCT
CTGAACAGCAGCAGGAGAACCTGGGTGTCTCTTCTCACTCAGATGCCGGG
CTCCTGGAGCTCCTGCCTCTCCTGGTTGTCTGTAGAGGTTTTTTCCTCTG
TTGANAACCCTCTGCCTCTCAGCACCGACTCTGACTTACTTTTGCTTCCT
AATCACTAAGCTTTGTTTGTTTTTTTCTGTTCCTTTTATCTGTGTGCTGT
GTCTATTTCATATCATTTTCCATTTACATCTTTGTCTGCTAATGGTATCA
GTAGATTTCCTCTTGATTTCTGGACCTCGTCTTTTCTCCTTCATCTATTT
AAGAAAAGAGAAGGAAGTCCATTCATGCCATTTGCTTAGGAGAACTGAAG
CTCTCAGCTCACCTTTTCATGGCATACCTTACCTTCAGAGCAAAATGAAC
TCCCAGAAAATGGCAGACATACTCTTTN
CATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGGACTCTCTCTCATG
AATATACTTTCTTTCTTTCCAAACCGACCTACCTACCTATCCCCCTCCCT
ATCGACGCTTCCTATTTTCCGTCGCACCTATGGAAGGCTTCCTTTCCTCC
CTCCCCCTCCCTCTTTCTCTTCTTTCCCTCTTCTTCTTTTCTTCTCCTTT
CTCTTCCCTTTCTCTTCCCCCTTTCTTTTCCTCCTTTTTTTTTTTTTTCT
CCCCCCTCTCCCTTCTTCTCTTTTTTTTTTTCCTCTTTTTTCCCCTCTTT
TTTTTCTTTTTCCTCCTTTTCCCTCCTCTCTTTCTTTTTTTTCCCTTTTT
TTTTTTTCTCCCTCTTTTTTTTTCCCCCCCTTTTCCCCTTTTTTTCCCCT
CCCTCCTTTTTTTTTTTTTCTCCTCTTCTTCTCCTCTTCCCTTTTTTCCT
TCCTTTTTTCCCTTTTCCCCTTTTTCCCCTCTCCTCTTCCCCTTTTTTTT
TTCTTTTCCTTCCTTCCTTTCTTCTTTTTTTTTTTTTTCTCCCTTTCTCC
CCTCCTTCTCTTTCTCCTTTTTTTCCCCCCTTCTCCTTTTTTTTTTCCTT
TCTTTCTCCTCTTCCCCTTCTTTTTTTTCTTCTCCTTTTTTTCTCTTCTT
TTCTCTTCCCCTCTTCCCTCCTTTCTTCTTCCTTTTTCTTCTTTTCCTCC
CCCTTTTCTTCTCCTCTTCTTTTTTTTCTTTCTTCCCCTTTTTTTTTTCT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j07.b1 MSMg01no060_j07.b1 CHROMAT_FILE:
MSMg01no060_j07.b1 PHD_FILE: MSMg01no060_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:20 2005
         (607 letters)



>mm_chr18_75284141_75285147
          Length = 1007

 Score = 1104 bits (571), Expect = 0.0
 Identities = 594/602 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttatatattcctgatcttgtgcttttttccattgcagtctgttaatatagtga 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttatatatttttgatcttgtgcttttttccattgcagtctgttaatatagtga 265

                                                                       
Query: 66  aatacactgatgaatcttttcattgctattaaagcagtcctcccattcctgggatgacac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatacactgatgaatcttttcattgctattaaagcagtcctcccattcctgggatgacac 325

                                                                       
Query: 126 catgattggtcatgatgtgttaatttgtagtatgtatccatatactgtttggttaatctt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catgattggtcatgatgtgttaatttgtagtatgtatccatatactgtttggttaatctt 385

                                                                       
Query: 186 tgagttttgttagctgtgtcctaaggaacttgcatactttttctaagataacctttattg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgagttttgttagctgtgtcctaaggaacttgcatactttttctaagataacctttattg 445

                                                                       
Query: 246 ccttggtactcgctggcagctctgaacagcagcaggagaacctgggtgtctcttctcact 305
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccttggtactctctggcagctctgaacagcagcaggagaacctgggtgtctcttctcact 505

                                                                       
Query: 306 cagatgccgggctcctggagctcctgcctctcctggttgtctgtagaggttttttcctct 365
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 506 cagatgccgggctcctggagctcctgcctcacctggttgtctgtagaggttttttcctct 565

                                                                       
Query: 366 gttganaaccctctgcctctcagcaccgactctgacttacttttgcttcctaatcactaa 425
           ||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gttgagaaggttctgcctctcagcaccgactctgacttacttttgcttcctaatcactaa 625

                                                                       
Query: 426 gctttgtttgtttttttctgttccttttatctgtgtgctgtgtctatttcatatcatttt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctttgtttgtttttttctgttccttttatctgtgtgctgtgtctatttcatatcatttt 685

                                                                       
Query: 486 ccatttacatctttgtctgctaatggtatcagtagatttcctcttgatttctggacctcg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccatttacatctttgtctgctaatggtatcagtagatttcctcttgatttctggacctcg 745

                                                                       
Query: 546 tcttttctccttcatctatttaagaaaagagaaggaagtccattcatgccatttgcttag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcttttctccttcatctatttaagaaaagagaaggaagtccattcatgccatttgcttag 805

             
Query: 606 ga 607
           ||
Sbjct: 806 ga 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)