Query= MSMg01no060_n04.b1 MSMg01no060_n04.b1 CHROMAT_FILE:
MSMg01no060_n04.b1 PHD_FILE: MSMg01no060_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:38 2005
(587 letters)
>mm_chr18_42816167_42817152
Length = 986
Score = 1075 bits (556), Expect = 0.0
Identities = 576/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaataatgcggttgcctggattagttgacatgccaactcagactggggaaatt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaataatgtggttgcctggattagttgacatgccaactcagactggggaaatt 264
Query: 65 ctacatggtcttactcctagaaagagagctgcaggttgtcagtgactgttaagagaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctacatggtcttactcctagaaagagagctgcaggttgtcagtgactgttaagagaagga 324
Query: 125 aaatcagttttcttcagggacaagctccctcataggttgtctaattcaaaatggtcatct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatcagttttcttcagggacaagctccctcataggttgtctaattcaaaatggtcatct 384
Query: 185 ctgcacatacatacattctctaacagattatctgaacaagaaaaacaaatatcagaatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcacatacatacattctctaacagattatctgaacaagaaaaacaaatatcagaatta 444
Query: 245 aatgtcattgttcatcaaagggacctaacagatatctacagaatattgtagctaaatacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgtcattgttcatcaaagggacctaacagatatctacagaatattgtagctaaatacc 504
Query: 305 aaagaatatacattctaatgagcaacactaagtggactcaataggctgtgtatacacatg 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaatatacattctaatgagcaacattaagtggactcaataggctgtgtatacacatg 564
Query: 365 tgcatctatatttatacacacacatatgtaacaataataaataaagataataaatttggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcatctatatttatacacacacatatgtaacaataataaataaagataataaatttggg 624
Query: 425 agggagaagggacgcaggaggagttaaatggagagtggagaaaagcaggagtgatgtagg 484
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 agggagaagggacacaggaggagttagatggagagtggagaaaagcaggagtgatgtagg 684
Query: 485 tgtgcagtcctcatgtatgaagttcttaaaatataagataaaaaaaaaacttcaattagt 544
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 tgtgcaatcctcatgtatgaagttcttaaaatataagataaaaaaaaa-cttcaattagt 743
Query: 545 gaanaaaaatctgtttaccttccatgatcaaattggattcatt 587
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaaaaaaatctgtttaccttccatgatcaaattggattcatt 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space: 563152
Effective search space used: 563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_n04.g1 MSMg01no060_n04.g1 CHROMAT_FILE:
MSMg01no060_n04.g1 PHD_FILE: MSMg01no060_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:38 2005
(421 letters)
>mm_chr18_42940418_42941238
Length = 821
Score = 737 bits (381), Expect = 0.0
Identities = 411/421 (97%)
Strand = Plus / Minus
Query: 1 tatttgttctgtaggcgaggaggccatggatgctgaagctagctctaggtagagggtctc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tatttgttctgtaggcgaggaggccatggatgctgaagctagctccaggtagagggtctc 562
Query: 61 agggtggtagagctgggatcgctacccaggcttggtgagttcagcttcttcttgctcctc 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 561 agggtggtagagctgggatcgctacccaagcttggtgagttcagcttcttcttgttcctc 502
Query: 121 atatcattatgttctcgtccccgaccacatcactccaacacattttggactgagaggaag 180
|||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 501 atatcattatgttctcatccccgaccacatcactccagcacattttgaactgagaggaag 442
Query: 181 atgaggttccatatactattgcaaagatgtctcctgctgcctcaggacccaggttagaat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaggttccgtatactattgcaaagatgtctcctgctgcctcaggacccaggttagaat 382
Query: 241 agttgaagggttcgggttgatgattttccccctatggaaatgagcatggacagttcatat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgaagggctcgggttgatgattttccccctatggaaatgagcatggacagttcatat 322
Query: 301 ttccaactgaatattcggaatatagccattccacaatttggaataaacaaacttggcaat 360
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttccaactgaatattaggaatatagccattccacaatttggaataaacaaacctggcaat 262
Query: 361 ttggaataaatgaatttgattcttggtctcctaattaccagaactctgtgttgataaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaataaatgaatttgattcttggtctcctaattaccagaactctgtgttgataaaga 202
Query: 421 t 421
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
