BAC Information

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BAC

Clone NameMSMg01-060N08
Chromosome18 (Build37)
Map Location 40,462,154 - 40,559,388
singlet/doubletdoublet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060N08.T7 (MSMg01no060_n08.b1)MSMg01-060N08.TJ (MSMg01no060_n08.g1)
ACCAG287185AG287186
length732679
length of high quality
(start - end)
674 (44 - 717)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no060_n08.b1 PHD_FILE: MSMg01no060_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:39 2005CHROMAT_FILE: MSMg01no060_n08.g1 PHD_FILE: MSMg01no060_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,558,719 - 40,559,388)(40,462,154 - 40,462,495)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGGATAACTACATCCAGTGCTTTCCACTCATTTCTCCAGACAGCT
CAGGGACGTTGCTACTGTTTCTTAAGGACAGAGAACTCCAAGGATCTTCT
TCTGATTTCTCAGGCTCTTAATGATATGATACCAATATTGATGAGTGACA
CTGGCATCCTATCTTTAATTTAAAAACCTTAAAGCCTTTCAGTCTTTAGA
GAAATGGACAGGCACCCCATCTCCCACCATAACTGTACTCCACAGCTAAA
AGCATACATTGCTTGACAGCTGACAGCGTTCACTTTTCCTGCTCTGGGTA
ATTATAGACTCCCGCTTTTCAACCAATGCTTCTGTCTCCGTGCAAACGGG
AAGTCTTTCAGAATATATAAGCAGCAATCATCTTATTATGGAGACCTGAT
AAAACTGAAGGACCAGTGCAATGAAATGTATTAGCTTGGGCTAGTCTTGC
AGTAACTGGAAAATTAAATCCACCAGTTCATCAATGGCGCTGTGCTCTGA
GGTCAGAAAAGAGAGAGAAGCCCTTTCTTGCTTAAAACAAAATTAAGGAA
GCACTGTCTTAGTCAGGGTTTCTATTCCTGCACAACACATCATCACCAAG
GAACAAGTTGGGGAGGAAAGGGTTTATTCGGCTTATATTTCCACATTGCT
GTTCATCACTTAAGGCAGTCAGGACTGGAACT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATTTTCTTTATTTTTCTACCAAGTTG
CTGTTGCCATCAGTGGGCACCCTAGCATAGCTTTTCCCTTAAAACTTCCT
TCCAATTCTCACTTCAATTTTCCTTGTGTGTTTCCTTCACTATTCCTCCC
CACAATCTAAACTCTGCCAGCAGGCTTGAACTATTTCCGTGTTTGGTAGC
TTGGCACTTAGGAACCATGTGTGAAGTTCTGATTCCTTGTTTGTGCCGTG
AGTAATTCTATGGCCCTGGGAATGGAGCAATGAATGAGACAGACAGCTTT
GCCCTTAGGGAGCTTACGTTCCAGTTTGGGGAATTGATAAACTGGCAGAT
AGAAATGAATGGGCGCAGCAGCCTCAAGTAGAAACTTCAGAAAGCGACTG
TTGGGAGCTTCTGTCATGGTATGAAGGCTGACCCACAACGACCCCACCGA
GTGAATGACACTGCCCAGATATTTGAAACACGCTTGGAAAAAGGCTTACC
TGCAATCCTAAAAAAGCCCTTTGTTTACAAACTCTATCAACAGTGACCAC
CCGCTTTTTGACCTAATACCGTCCTCGGAACATCCCTCGATTCCCAATAA
GCCATCTCCTCCCAAACGTGTACCGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_n08.b1 MSMg01no060_n08.b1 CHROMAT_FILE:
MSMg01no060_n08.b1 PHD_FILE: MSMg01no060_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:39 2005
         (674 letters)



>mm_chr18_40558628_40559701
          Length = 1074

 Score = 1257 bits (650), Expect = 0.0
 Identities = 665/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggataactacatccagtgctttccactcatttctccagacagctcagggac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaattctctggataattacatccagtgctttccactcatttctccagacagctcagggac 702

                                                                       
Query: 65  gttgctactgtttcttaaggacagagaactccaaggatcttcttctgatttctcaggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gttgctactgtttcttaaggacagagaactccaaggatcttcttctgatttctcaggctc 642

                                                                       
Query: 125 ttaatgatatgataccaatattgatgagtgacactggcatcctatctttaatttaaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttaatgatatgataccaatattgatgagtgacactggcatcctatctttaatttaaaaac 582

                                                                       
Query: 185 cttaaagcctttcagtctttagagaaatggacaggcaccccatctcccaccataactgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cttaaagcctttcagtctttagagaaatggacaggcaccccatctcccaccataactgta 522

                                                                       
Query: 245 ctccacagctaaaagcatacattgcttgacagctgacagcgttcacttttcctgctctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctccacagctaaaagcatacattgcttgacagctgacagcgttcacttttcctgctctgg 462

                                                                       
Query: 305 gtaattatagactcccgcttttcaaccaatgcttctgtctccgtgcaaacgggaagtctt 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtaattatagactcccgctttacaaccaatgcttctgtctccgtgcaaacgggaagtctt 402

                                                                       
Query: 365 tcagaatatataagcagcaatcatcttattatggagacctgataaaactgaaggaccagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcagaatatataagcagcaatcatcttattatggagacctgataaaactgaaggaccagt 342

                                                                       
Query: 425 gcaatgaaatgtattagcttgggctagtcttgcagtaactggaaaattaaatccaccagt 484
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 341 gcaatgaaatttattagcttgggctagtcttacagtaactggaaaattaaatccaccagt 282

                                                                       
Query: 485 tcatcaatggcgctgtgctctgaggtcagaaaagagagagaagccctttcttgcttaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcatcaatggcgctgtgctctgaggtcagaaaagagagagaagccctttcttgcttaaaa 222

                                                                       
Query: 545 caaaattaaggaagcactgtcttagtcagggtttctattcctgcacaacacatcatcacc 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 221 caaaattaaggaagcactgtcttagtcagggtttctattcctgcacaacacatcatgacc 162

                                                                       
Query: 605 aaggaacaagttggggaggaaagggtttattcggcttatatttccacattgctgttcatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aaggaacaagttggggaggaaagggtttattcggcttatatttccacattgctgttcatc 102

                     
Query: 665 acttaaggca 674
           ||||||||||
Sbjct: 101 acttaaggca 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_n08.g1 MSMg01no060_n08.g1 CHROMAT_FILE:
MSMg01no060_n08.g1 PHD_FILE: MSMg01no060_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:39 2005
         (344 letters)



>mm_chr18_40461954_40462697
          Length = 744

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattttctttatttttctaccaagttgctgttgccatcagtgggcaccctagcatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattttctttatttttctaccaagttgctgttgccatcagtgggcaccctagcatagc 260

                                                                       
Query: 61  ttttcccttaaaacttccttccaattctcacttcaattttccttgtgtgtttccttcact 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttttcccttaaaacttccttccaattctcacttcaatttttcttgtgtgtttccttcact 320

                                                                       
Query: 121 attcctccccacaatctaaactctgccagcaggcttgaactatttccgtgtttggtagct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 attcctccccacaatctaaactctgccagcaggcttgaactatttccgtgttcggtagct 380

                                                                       
Query: 181 tggcacttaggaaccatgtgtgaagttctgattccttgtttgtgccgtgagtaattctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcacttaggaaccatgtgtgaagttctgattccttgtttgtgccgtgagtaattctat 440

                                                                       
Query: 241 ggccctgggaatggagcaatgaatgagacagacagctttgcccttagggagcttacgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccctgggaatggagcaatgaatgagacagacagctttgcccttagggagcttacgttc 500

                                                     
Query: 301 cagtttggggaattgataaactggcagatagaaatgaatggg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtttggggaattgataaactggcagatagaaatgaatggg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)