CAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGC
GGAATTCTGAGGTTTTCCATGCTAAGCATGAAAACTATTACTCAACACAG
TTCTTTTTAAACTTATTACATTATGATCATTATCTTAATATATATTGAAA
TATCATATTAAGATAAATGTATTAAGATACTAAAATTTTCTCATTGTTTG
AGAAATTAATATATCTGTGCTAGAGCTTATATTTGAAAACAACTATGTTA
AAATATGGAATACAAAATACTAGTATCAGACACCTACAAAGAGATCAAAT
AAGGGCAACTGTTGTAATCATCTCTATAATACCTTAAGTAAAAGGAAAGT
ATAGTTATTTCTATTCTATAAAAGACTTAAACACCTTAAGCATGTTAGAG
AAATATAAAAATTCATTATTAAAATATTTTTAAAATTTGCTCATATGCCA
TTTGATCATAACATAGCACCATCGTTTTATAGGACATGAATGTAAACATT
TATGTTCTCTTATAATATTTTTAGGCTGACACTATCTTTGTATTCTAAGC
CTTTCTCAACCCCTTATTCTTGCTTCCTCCAACCACAAGTCTTCCACTGT
TGTTACTTCCAGTGACCATTTTATACATATATATCTATGTTTCTGATATT
ACTTTTGATTCTGATACAGCATCAACTCCTCATTTCAAAATTCTGTCAAA
AATAAATTCTGCCTGTAATGAN

TGGGAGGCCTGGGGCGCCTGGCTTCGNCAGCCGNNGAACNANAGAAGGAT
TACGGCACCGGCAGGCCNNGGCCNGNNCNAAGCCNNCGGGAAAAGAACCC
GGACNCCCCCCCNCCANNANCNCCCAAGNAAGNCAGNCCCGGGNANAAGG
NGCGCCAAGGGAACCGGAACNGGNCCAGAGAAGGAACCGNNANAGAAANC
CGGCCNNAACCAAGNANCCGGGAACCCCCCGCAAACATTTTATAACNGCN
AACANCGCNACNNGACAAGGAACACACACCNCAGAGCAAACAGCAGGGGC
CCCTTTTTTTTTTTTAGGCCCACACACCNACNCNCNGNGCNNCAGCTATC
CTCTCTCCCCCCACTTAGCTATTGTTTTACTATATGCTAGCATTTAATGT
ATCACTTTACCTTATTGTTGCTGCTGTTGCCATATCTGCCGTCACTATAA
CAAGAAAATTAAATGAAACTATTTTACCTATTGAGTTTTTATAACATGCC
AAAGATTCTTTGAGGTCACTGGTAGCATCCATGACAGATCATCAAGGATC
CTTTGTCTCCCTCCATACCTTTTCTACCATATTATTGCTTTCTAGGTGAC
TACCTATCTAAACTAATTCACTAATTACTTCAGACGAACGCTTTTTGTTT
CCAACAGACACCCCCCATGTATTATTTTTTGTGCTACTTGACCTGACTAC
CTACCTTCTTCCTCTATTAT

Query= MSMg01no061_n18.b1 MSMg01no061_n18.b1 CHROMAT_FILE:
MSMg01no061_n18.b1 PHD_FILE: MSMg01no061_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:57 2005
         (593 letters)



>mm_chr18_44276095_44277087
          Length = 993

 Score = 1019 bits (527), Expect = 0.0
 Identities = 546/553 (98%), Gaps = 2/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  catgctaagcatgaaaactattactcaacacagttctttttaaacttattacattatgat 80
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 catgctaagcatgaaaactattactcaacacagttctttttaaacttagtacattatgat 494

                                                                       
Query: 81  cattatcttaatatatattgaaatatcatattaagataaatgtattaagatactaaaatt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cattatcttaatatatattgaaatatcatattaagataaatgtattaagatactaaaatt 434

                                                                       
Query: 141 ttctcattgtttgagaaattaatatatctgtgctagagcttatatttgaaaacaactatg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttctcattgtttgagaaattaatatatctgtgctagagcttatatttgaaaacaactatg 374

                                                                       
Query: 201 ttaaaatatggaatacaaaatactagtatcagacacctacaaagagatcaaataagggca 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttaaaatatggaatacaaaatactagtatcagacacctacaaagagatcaaataagggca 314

                                                                       
Query: 261 actgttgtaatcatctctataataccttaagtaaaaggaaagtatagttatttctattct 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actgttgtaatcatctctataataccttaagtaaaaggaaagtatagttatttctattct 254

                                                                       
Query: 321 ataaaagacttaaacaccttaagcatgttagagaaatataaaaattcattattaaaata- 379
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 253 ataagagacttaaacaccttaagcatgttagagaaatataaaaattcattattaaaatac 194

                                                                       
Query: 380 -tttttaaaatttgctcatatgccatttgatcataacatagcaccatcgttttataggac 438
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 193 atttttaaaatttgctcatatgccattttatcataacatagcaccatcgttttatgggac 134

                                                                       
Query: 439 atgaatgtaaacatttatgttctcttataatatttttaggctgacactatctttgtattc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atgaatgtaaacatttatgttctcttataatatttttaggctgacactatctttgtattc 74

                                                                       
Query: 499 taagcctttctcaaccccttattcttgcttcctccaaccacaagtcttccactgttgtta 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  taagcctttctcaaccccttattcttgcttcctccaaccacaagtcttccactgttgtta 14

                        
Query: 559 cttccagtgacca 571
           | |||||||||||
Sbjct: 13  catccagtgacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)