BAC Information

Click to search

BAC

Clone NameMSMg01-061O19
Chromosome18 (Build37)
Map Location 19,836,761 - 19,837,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O19.T7 (MSMg01no061_o19.b1)MSMg01-061O19.TJ (MSMg01no061_o19.g1)
ACCAG288020AG288021
length702699
length of high quality
(start - end)
204 (79 - 282)615 (75 - 689)
definitionCHROMAT_FILE: MSMg01no061_o19.b1 PHD_FILE: MSMg01no061_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:02 2005CHROMAT_FILE: MSMg01no061_o19.g1 PHD_FILE: MSMg01no061_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXCTANATGCCGAGCATGCGCGGA
ATTCCTTCCCTTGCCCCTAAAGAGAGACCAGTATAGGTACCTACTGAACA
ACTCTTTCTGTCTGTCTCTATCTCTCTCTGTCTCTGTCTATCTGTCTGTC
TCTTTCTCTGTGTCTGTCTTTTTGTACCTGTTTCTATCTCTGTCTCTGTC
TGTCTGTCTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCAT
GTGTGTGTATTCCTGTCCAATGGAATGATACCGGCATACAAAAGAGATAT
CTACACACTCATACACTTTCTTCTTTGCTTTTGCTGTTAGGGTTTGAATC
AGTTTTAAGTTCATAGGAAAATTTTGTAGAATATGTGGAGAGTTCCTTTA
GAGAGTACATCCCTACCAAAGGACAGGCCCATTACTAGTGTATAAATTAA
AAATCTAGTTAAATGTTTCAATTGTTGATAACATTTCAGGCATGCATTGA
CAAGGCAGCATGTCGCAAAATCTATCTACTGGATTGGCTATTTGCACTAA
ATCCTGAAGCAAGGGTTGCTACAAACTTAGCCAGTGTACGATGGCAGAGG
GCACATTACTTTAAAGATACCCTGTACTCTGGCTGGTCATTCACTTGGAT
CCCTACAAACGGAGAACAACGATGTTTTTGGAGTGCCACATTTCTGCGGT
CA
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACTGAGGAAGTCCAAGTGTGCTC
TTATCCTGTTACTGACCTTGTTAGTCAATCACATCTCAGTAGATTCTAGG
GATGTCTGCTTGGACCCATCAGAACCAGTCACCCAATTGTTACTTTTATC
TATGCTTAATAGGGGAAGATTTATATGCAAATATTTCAAATGGTTTTTGT
TGTGTTCCTAATTATCACTTAAATTGGAATTTCTCATGTATTTCTGGCAA
TGCTTATTGCCAAACAGCACTTGGAGTTATCCTGTGGCAAGTGCTGTCCC
TCACTCATGTGCAACCTATACATGCGGATTCATTATGCAATGGTAGAAAA
TTAATAAATGATTAAATGCTATTTTTGAGATTTCTGAGACATAAATGAAG
ATCATAATCAGAAATGTGTCAACATTATTTAAGAACAGTCCATAACTTCT
TTAACCATAAACTACATATCATCACACCACTATCAATGGTATTTAAGTAT
TGTGATCACTATACAATCTTAGAAGATAATTTTTCGGTAGTTATTTTTGT
AACATCTTATTATCACATGACAATCATTATGATGATATTGGTTCTTATCT
TATTATTTTTAAAAATGATTCTGGTGGCCTAATCTTGTAAAGATGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o19.g1 MSMg01no061_o19.g1 CHROMAT_FILE:
MSMg01no061_o19.g1 PHD_FILE: MSMg01no061_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:02 2005
         (615 letters)



>mm_chr18_19836561_19837575
          Length = 1015

 Score = 1152 bits (596), Expect = 0.0
 Identities = 611/616 (99%), Gaps = 2/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacactgaggaagtccaagtgtgctcttatcctgttactgaccttgt-tagtcaatcaca 59
           ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct: 201 cacactgaggaagtccaagtgtgctcttaccctgttactgaccttgtct-gtcaatcaca 259

                                                                       
Query: 60  tctcagtagattctagggatgtctgcttggacccatcagaaccagtcacccaattgttac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctcagtagattctagggatgtctgcttggacccatcagaaccagtcacccaattgttac 319

                                                                       
Query: 120 ttttatctatgcttaataggggaagatttatatgcaaatatttcaaatggtttttgttgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttatctatgcttaataggggaagatttatatgcaaatatttcaaatggtttttgttgt 379

                                                                       
Query: 180 gttcctaattatcacttaaattggaatttctcatgtatttctggcaatgcttattgccaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttcctaattatcacttaaattggaatttctcatgtatttctggcaatgcttattgccaa 439

                                                                       
Query: 240 acagcacttggagttatcctgtggcaagtgctgtccctcactcatgtgcaacctatacat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acagcacttggagttatcctgtggcaagtgctgtccctcactcatgtgcaacctatacat 499

                                                                       
Query: 300 gcggattcattatgcaatggtagaaaattaataaatgattaaatgctatttttgagattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcggattcattatgcaatggtagaaaattaataaatgattaaatgctatttttgagattt 559

                                                                       
Query: 360 ctgagacataaatgaagatcataatcagaaatgtgtcaacattatttaagaacagtccat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgagacataaatgaagatcataatcagaaatgtgtcaacattatttaagaacagtccat 619

                                                                       
Query: 420 aacttctttaaccataaactacatatcatcacaccactatcaatggtatttaagtattgt 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacttctttaaccataaactatatatcatcacaccactatcaatggtatttaagtattgt 679

                                                                       
Query: 480 gatcactatacaatcttagaagataatttttcggtagttatttttgtaacatcttattat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatcactatacaatcttagaagataatttttcggtagttatttttgtaacatcttattat 739

                                                                       
Query: 540 cacatgacaatcattatgatgatattggttcttatcttattatttttaaaaatgattctg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cacatgacaatcattatgatgatattggttcttatcttattatttttaaaaatgattctg 799

                           
Query: 600 gtggcctaatcttgta 615
           |||||||| |||||||
Sbjct: 800 gtggcctagtcttgta 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)