BAC Information

Click to search

BAC

Clone NameMSMg01-062C14
Chromosome18 (Build37)
Map Location 89,742,904 - 89,743,723
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062C14.T7 (MSMg01no062_c14.b1)MSMg01-062C14.TJ (MSMg01no062_c14.g1)
ACCAG288201AG288202
length1,1961,176
length of high quality
(start - end)		776 (89 - 864)819 (92 - 910)
definitionCHROMAT_FILE: MSMg01no062_c14.b1 PHD_FILE: MSMg01no062_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:28 2005CHROMAT_FILE: MSMg01no062_c14.g1 PHD_FILE: MSMg01no062_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTTTTTTTNNNNAGACAATGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCATGGAATTGTTTCAACCCTTTAATATCTGCTAAGGCT
TATTTTCTGTCTGATTATACCTTCAGTTTTGGAGACATTCCGTGAGGTGT
TGAGAAGAAGGCATAGTCTTTTGTTTCAGAATGAAATATTTTTTAGATAT
CTGTTAAATCCATTTGAATAATAACTTCAGTAACTTTCTCTGTGTATCTG
TTTGGTTTTGGTTTCAATGACCAGTCCATTAGTGAGAGTGGGATGTTGAA
GTCTCTCATTATTACTGTATGAGGTTCAATGTGTGTTTTGAGATTTAGTA
AAGTTTCTTTTATGAATGTGGGTGCTCTTGCATTTGGAGCATAGACGTTC
AGAATTGAGACTTCATCACCATACTTGAGCTCAACCTGTACTACAGAGCA
ATAATGATAAAAAACACATGGTATTGGTATAGAGACAGACAGGTCAATCA
ACGAGACAGACTTGAAGACCTAGAAATAAGCACACCTTTGGACACATGAT
CTTTGACAAAGAAGCCCAAACCACACAGTTAAAAAAAATCATCTTCAACA
ATTGATGGTCTGCATGTAGAAGAATTCAAATTGCTCCACATTTATCCCCT
TCTACAAAGCTCAAGTTGAAGTGGATCAAGAACCTCAGCATATAGCCAGA
CACATTGAATATAATAGAAGAGAAAATGGGAAATAGCCTTGAACACATTG
GCACAGAGGAAAATTCCTGAACAGAACACCAATGGCTCAGCCTCTAATAT
CAACAATTGGTGTTTGGGATCTCATGAAACTGAAGAGCTTCTGTAAGGCA
ACAGACACTCTCAATAAGACAAAACAGCAACCATCAGATTGGGAAAAGAT
CTTCACTAGTCCAACAGAATAATAATATCCAAAATATGCNAAGAACTTCA
GAAGTTAAACTTCAAAATATACAAATTAATAATCCCAATTAAGAATGGAG
TATAGAAATAAACAGGGAATTTTCTACTGGAGAAATCTCAAATGGTGGAG
GAACATGGTAAAGAATGTTTCACATCCTTTTATCTTCTGGGAAAGGGGAT
CCAACAAAACCTAAAATTCCACTTGTGTTCATTCTGATGGGTAAAAAACA
AAACCCCCCTGTAAACTAATATTGGTGTATAATGTGTAAAAAAAAA

NCCATCTATTTNTNNTAAGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGAGTCCAAGTTAGACA
TGGTGTTTTTTTCCCTCCCCCCTCCAGCAAGAAAGGGTACCCCTCCCAAA
TTTTGAATCACTGACTCCTTCAGTGTCAAGCTAGAGAAAAGTCTTCTTTT
GGAAACTCCTAATGAAATTTTGGGGAAAACATTTTGGGGGGAATTTTTCT
TACAAAATAATAATCAGAGCATTATTTTATACTTTAATGACATCTTTAAA
GTATAAAAGAATGCTCTGATTATTGTTATTACTAATATATGTTAATGCTC
TCAGCAGAACTCTTTGCATATGTGGGATTTGAATTGGCTATTCAATGAGT
ATTCCTATGTCTTAATGCCAGAAATGTCGTTAAGAATCGGTTTCTGCTAA
ATAATAATCAACACAATATGCTCAAACGTAAGTCAACAGTTTTGTGAGAT
CTCCATGAAAACTTTGCAGTCTAAAAACCATAGATCATGGAAAGATCGAA
AAGAATTTTGCCAACAAATATTTGGAATATAATCTGATAATTCTACTCAA
GGGAGAGTATGCTACTCCAGATAGTCTTCCCAGGGTTCTTGTACTTAGCT
TTTCATGTTGGCATCAAGTCCCACATAGCAGCATTTTTCTGCTTTATAGC
AACAAAATCAAACTATAAGTAAAAGCAGTTATTGGCTATGAACAAGCAAC
AGTGTATCACCAGACCCTCTGAAGCAACATTCCATCCTTCTCATCCTGAT
GTTTGAATGACCCGTTCTGCAAGTGCATGTCCTCCACTTCTAGTAACCAG
CTCCCTAATTAAGAATAGCACACCAGTTCAGTAGCAGGTCAGCCTAGCTG
TTGACCCCATCAAATATCAGCAGGTTCATTTTCCAAAGAAACTTTATAGT
TTGTCACCTTGCTACTGCCTTTCCCACAGGACCATAATACTGACAAAGCT
TGTTGACAGGAAGGCCTTGCCGGAAAGAATCTCTACCTTTCCTGGGAATG
GGATCAACCCCGGGGCCCGGGTTTGGGGAAAATCCCTTGAAAAAGTTTCG
GGGAATTTTTCTTTCGAAAATCCCAAAAAAAAATGGATGTCTTCTTGGGA
AAATAAAGCACGGGAAAATTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_c14.g1 MSMg01no062_c14.g1 CHROMAT_FILE:
MSMg01no062_c14.g1 PHD_FILE: MSMg01no062_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:28 2005
         (819 letters)



>mm_chr18_89742704_89743923
          Length = 1220

 Score = 1485 bits (768), Expect = 0.0
 Identities = 807/824 (97%), Gaps = 9/824 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    agttagacatggtgtttttttccctcccccctc----cagcaagaaagggtacccctccc 56
            ||||||||||||||||||||||||||||    |    |||||||||||||||  ||||||
Sbjct: 1020 agttagacatggtgtttttttccctccc----caagacagcaagaaagggtagtcctccc 965

                                                                        
Query: 57   aaattttgaatcactgactccttcagtgtcaagctagagaaaagtcttcttttggaaact 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  aaattttgaatcactgactccttcagtgtcaagctagagaaaagtcttcttttggaaact 905

                                                                        
Query: 117  cctaatgaaattttggggaaaacattttggggggaatttttcttacaaaataataatcag 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  cctaatgaaattttggggaaaacattttggggggaatttttcttacaaaataataatcag 845

                                                                        
Query: 177  agcattattttatactttaatgacatctttaaagtataaaagaatgctctgattattgtt 236
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  agcattcttttatactttaatgacatctttaaagtataaaagaatgctctgattattgtt 785

                                                                        
Query: 237  attactaatatatgttaatgctctcagcagaactctttgcatatgtgggatttgaattgg 296
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 784  tttactaatatatgttaatgctctcagcagaactctttgcgtatgtgggatttgaattgg 725

                                                                        
Query: 297  ctattcaatgagtattcctatgtcttaatgccagaaatgtcgttaagaatcggtttctgc 356
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 724  ctattcaatgagtattcctatgtcttaatgccagaaatgtccttaagaatcggtttctgc 665

                                                                        
Query: 357  taaataataatcaacacaatatgctcaaacgtaagtcaacagttttgtgagatctccatg 416
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 664  taaataataatcaacacaatatgctcaaacataagtcaacagttttgtgagatctccatg 605

                                                                        
Query: 417  aaaactttgcagtctaaaaaccatagatcatggaaagatcgaaaagaattttgccaacaa 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  aaaactttgcagtctaaaaaccatagatcatggaaagatcgaaaagaattttgccaacaa 545

                                                                        
Query: 477  atatttggaatataatctgataattctactcaagggagagtatgctactccagatagtct 536
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 544  atatttggaatataatctgataattctactcaagggagaatatgctactccagatagtct 485

                                                                        
Query: 537  tcccagggttcttgtacttagcttttcatgttggcatcaagtcccacatagcagcatttt 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  tcccagggttcttgtacttagcttttcatgttggcatcaagtcccacatagcagcatttt 425

                                                                        
Query: 597  tctgctttatagcaacaaaatcaaactataagtaaaagcagttatt-ggctatgaacaag 655
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424  tctgctttatagcaacaaaatcaaactataagtaaaagcagttattgggctatgaacaag 365

                                                                        
Query: 656  caacagtgtatcaccagaccctctgaagcaacattccatccttctcatcctgatgtttga 715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  caacagtgtatcaccagaccctctgaagcaacattccatccttctcatcctgatgtttga 305

                                                                        
Query: 716  atgacccgttctgcaagtgcatgtcctccacttctagtaaccagctccctaattaagaat 775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  atgacccgttctgcaagtgcatgtcctccacttctagtaaccagctccctaattaagaat 245

                                                        
Query: 776  agcacaccagttcagtagcaggtcagcctagctgttgaccccat 819
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  agcacaccagttcagtagcaggtcagcctagctgttgaccccat 201



 Score = 91.6 bits (47), Expect = 3e-22
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                       
Query: 163 aaaataataatcagagcattattttatactttaatgacatctttaaagtataaaagaatg 222
           |||| ||||||||||||||| ||||||||||||| ||  || ||||||||||||||||||
Sbjct: 783 aaaacaataatcagagcattcttttatactttaaagatgtcattaaagtataaaagaatg 842

                      
Query: 223 ctctgattatt 233
           |||||||||||
Sbjct: 843 ctctgattatt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 819
Length of database: 1220
Length adjustment: 10
Effective length of query: 809
Effective length of database: 1210
Effective search space:   978890
Effective search space used:   978890
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |