Query= MSMg01no062_j02.b1 MSMg01no062_j02.b1 CHROMAT_FILE:
MSMg01no062_j02.b1 PHD_FILE: MSMg01no062_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:18 2005
(622 letters)
>mm_chr18_62822029_62823049
Length = 1021
Score = 1141 bits (590), Expect = 0.0
Identities = 614/622 (98%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 1 agccttccatagagagaagaaacaaaaatattagcctagagttcacccatcaccacctcc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agcctttcatagagagaagaaacaaaaatattagcctagagttcacccatcaccacctcc 762
Query: 61 tttccccacactccaagatattggagcagccctggaagttcaccagggcactctccaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttccccacactccaagatattggagcagccctggaagttcaccagggcactctccaaac 702
Query: 121 accttggttgcttctcttgacaaagactgaccttgtatccatcccagaatgggttccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 accttggttgcttctcttgacaaagactgaccttgtatccatcccagaatgggttccaaa 642
Query: 181 ctgattatatcatggcggggttgcctaggaacagagtcttttactttactgatttacaga 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 641 ctgattatatcatggcggggttgcctagaaacagagtcttttactttactgatttacaga 582
Query: 241 ataaaaaagtcaggaaaagaaatgtctcagcacctaggcagattttaatgaaagcataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ataaaaaagtcaggaaaagaaatgtctcagcacctaggcagattttaatgaaagcataaa 522
Query: 301 tatgaatgtacaacacagcacataaaaatacacattccaccaggtagagagggaccttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatgaatgtacaacacagcacataaaaatacacattccaccaggtagagagggaccttaa 462
Query: 361 atggtgccctagtgttttttaaaaagccaatatttgtctggtgatacagtgggctctcta 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 461 atggtgccctagtgttttttaaaaagccaatatttgtctggtgatgcagtgggctctcta 402
Query: 421 attcctcagaactggcttgtttgggttgtcatggggtgtgtgtgggagcttgggtcatta 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attcctcagaactggcttgtt-gggttgtcatggggtgtgtgtgggagcttgggtcatta 343
Query: 481 gacaaagagaggaaagctgattggttcttaccacagaagctacccacaagaaaggcctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gacaaagagaggaaagctgattggttcttaccacagaagctacccacaagaaaggcctac 283
Query: 541 caagttcttcccagggggagataaggctcaccaagtcgttgccttgaaaagaggaagaga 600
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 282 caagttcttcccagggggagataagactcaccaagtctttgccttgaaaagaggaagata 223
Query: 601 atcaggaagatgaccatcttaa 622
|||||||||||| |||||||||
Sbjct: 222 atcaggaagatggccatcttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_j02.g1 MSMg01no062_j02.g1 CHROMAT_FILE:
MSMg01no062_j02.g1 PHD_FILE: MSMg01no062_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:18 2005
(728 letters)
>mm_chr18_62681366_62682492
Length = 1127
Score = 1280 bits (662), Expect = 0.0
Identities = 712/732 (97%), Gaps = 9/732 (1%)
Strand = Plus / Plus
Query: 1 gggataaggggaggcaggagaact--gacctggaataggacttctgcccaataaaacctt 58
|||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 201 gggataaggggaggcaggagaactgagac--ggaataggacttctggtcaataaaacctt 258
Query: 59 tcacttcaggttagtttcagaagtcacgtaaggaagagtttagaaatctgcctgtagttt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcacttcaggttagtttcagaagtcacgtaaggaagagtttagaaatctgcctgtagttt 318
Query: 119 gtctttccagacaatgtgccatcttctcaaggaaacaatagactaggatctgggctgtga 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 gtctttccagacaatgtgccatcttctcaaggaaacaatagtctaggatctgggctgtga 378
Query: 179 ctcagtcttctgtggaaagacgtgcatgtgaaaccagggcaccgaatctataactggggc 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcagtcttctgtggaaagatgtgcatgtgaaaccagggcaccgaatctataactggggc 438
Query: 239 agtgcaaacatttatgctaagagctttaaaactgaaggatttttccaggtcagtggataa 298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 439 agtgcaaacatttatgctaagagctttaaaactgaaggatttttccagctcagtgaataa 498
Query: 299 tggttctcagaacttttacaaacattcctcataagataatatgtacacaaaatatctata 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 tggttctcagaacttttacaaacattcctcataagataatatgtacataaaatatctata 558
Query: 359 ttaggaatataatcatgtcacattaaagaaaacacattatttcactgccaaaaaacag-- 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttaggaatataat---gtcacattaaagaaaacacattatttcactgccaaaaaacagag 615
Query: 417 cagtattttcaagtttacagtacctgagatccaattgtatgggttgtgtagatgaggaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cagtattttcaagtttacagtacctgagatccaattgtatgggttgtgtagatgaggaca 675
Query: 477 gttataaattgccagatatttgatacaggaaaaaacttcattgactgccttcatccctat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gttataaattgccagatatttgatacaggaaaaaacttcattgactgccttcatccctat 735
Query: 537 atcggtaatgataccaggattttctaccacatcagccaagccatacttcaccaaatctgc 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atcagtaatgataccaggattttctaccacatcagccaagccatacttcaccaaatctgc 795
Query: 597 attcgccattctgcctagaaagaaatcaatgtcaaagagagtctcagtgtcatggagtgc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 attcgccattctgcctagaaagaaatcaatgtcaaagagagtctcagtgtcatggagtgc 855
Query: 657 tgacaactcggtcccttactctttcatgttctaccaatggccattatcaggtagactcca 716
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 856 tgacaacttggtcccttactctttcatgttctaccaatggtcattatcaggtagacttca 915
Query: 717 tatttaaagtga 728
||||||||||||
Sbjct: 916 tatttaaagtga 927
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1127
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1117
Effective search space: 802006
Effective search space used: 802006
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
