BAC Information

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BAC

Clone NameMSMg01-063J14
Chromosome18 (Build37)
Map Location 88,634,991 - 88,635,188
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J14.T7 (MSMg01no063_j14.b1)MSMg01-063J14.TJ (MSMg01no063_j14.g1)
ACCAG289298AG289299
length783777
length of high quality
(start - end)
314 (109 - 422)197 (131 - 327)
definitionCHROMAT_FILE: MSMg01no063_j14.b1 PHD_FILE: MSMg01no063_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:01 2005CHROMAT_FILE: MSMg01no063_j14.g1 PHD_FILE: MSMg01no063_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTNNNNNNTTTTNTTTTTTAGTTGNTTTTTTTTTTTNGTTNAT
AAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTCCACTCTCATTTCCAGAGTAGCTAAACCAGT
TTGCAACCACACATACATGGCATTCATTCATACCCACACTATAGTATGAA
TGTATTGATAAATCCCAACCCAGGGTTCTTTCACACCTTACACCATGTTC
CCAGATGAAACACACACACACATAGCCTTTATATTTTAATAATGCCTTAA
GGAGCTAGGAAATTCCCTAACCTCCATGCTGTTAGACTCTACTTTCTATC
CATAATCCCATCATTACTTACTTCTGGTTCATCTTGACTGCTTTTGACAC
AACTGAGCAGCCCTCTGGTCTGTATTCTCTTGCTCCCTTTACATGGTTGC
CCATGTTTTTCCCTCTTGCATGTTCAGCCCTTCTTCAAAAAATACTTTCT
TCTCTTCTCTCCTTCACACAGTTCTAAAACATGGTAGGATTGCCTCCCCC
CCATCCCATCCTTCCTCAGATCACCAAAGAGAACCGTCTCATCCTTGCCA
AAATATAAAACCACTTTCCTCTAATATTCCCCCTTAATTCATTGTTGTTG
GCCCCCTTTTACTAATTAACCCCAATTTAACCGTCCAATCAAACTTCCTA
CAAATCTACCTGCCCTAAACCACCTTCCTTACATTCCTATCTACACTATC
CCGTCCCGTTCTTCCAAATTACCTTGTGCTACC
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCTTTTNTTCCCCANCCC
TCCNTAATACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAAAAATAATGTTTAA
CCTCATGAAAAACTTCACCATTGGTGCCCATTTCCTGCTCTGTGATCTTT
GTGACGTGTCTATAGGCATTAATGAATGTAAGATTAGTTTATATGTCTTG
CATGTCTGGTAGATGTTTATGGTACAGCAGATTTTTGGCTTTCTTTTCTG
AATAACACTGGGAATTGAATTCCAACACGAAGGCGCTCACTGAGAGAATT
CACGCACAACAAAACATAAAGAATGATTGATAGATACAATCACCGATTGA
TAGAAAGAAAGATTTTTTTTACACACCCACCGCCACAAAGAATGAAAGAA
AGACATAAATAATGAAATTGTACCCAAACTAAAAGATGCAAAACAACAAG
AAACATGAAACACCAACTATGTACTATGCCTCCTGAAGAAATTTAAAGCA
TCCTTTGTATGCAGCACCAATGATACATCAATGGCCCCTCAAAATTTCAA
ACCAAAAACTCCCAGTGATCCCCATAATATACCCCATAGGTAAAATCATC
CCATAAAATATGTAAGGGCCAAACAAATCCCTCCCGTATTATAATCATCT
TATATCGACAAAATAAAAACCCACTAAAGAAATATAACTATCAAATATTA
TGTACAATATACCCCTTCCTTAATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j14.g1 MSMg01no063_j14.g1 CHROMAT_FILE:
MSMg01no063_j14.g1 PHD_FILE: MSMg01no063_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:01 2005
         (197 letters)



>mm_chr18_88634791_88635388
          Length = 598

 Score =  344 bits (178), Expect = 2e-99
 Identities = 193/198 (97%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcaaaaataatgtttaacctcatgaaa-aacttcaccattggtgcccatttcctgct 59
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 201 attgcaaaaataatgtttaacctcatgaaacaacttcaccattggtggccatttcctgct 260

                                                                       
Query: 60  ctgtgatctttgtgacgtgtctataggcattaatgaatgtaagattagtttatatgtctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgatctttgtgacgtgtctataggcattaatgaatgtaagattagtttatatgtctt 320

                                                                       
Query: 120 gcatgtctggtagatgtttatggtacagcagatttttggctttcttttctgaataacact 179
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gcatgtctgggagatgtttatggtacagcagatttttggttttcttttctgaataacact 380

                             
Query: 180 gggaattgaattccaaca 197
           ||| ||||||||||||||
Sbjct: 381 ggggattgaattccaaca 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 598
Length adjustment: 8
Effective length of query: 189
Effective length of database: 590
Effective search space:   111510
Effective search space used:   111510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)