BAC Information

Click to search

BAC

Clone NameMSMg01-063K23
Chromosome18 (Build37)
Map Location 25,404,648 - 25,404,960
singlet/doubletsinglet
Overlap geneAW554918
Upstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3, 5730494M16Rik
Downstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K23.T7 (MSMg01no063_k23.b1)MSMg01-063K23.TJ (MSMg01no063_k23.g1)
ACCAG289360AG289361
length688680
length of high quality
(start - end)
319 (42 - 360)552 (56 - 607)
definitionCHROMAT_FILE: MSMg01no063_k23.b1 PHD_FILE: MSMg01no063_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:08 2005CHROMAT_FILE: MSMg01no063_k23.g1 PHD_FILE: MSMg01no063_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCTTCTTTCATTATGCCTTTGAGTGACTCTTTTACTAGAGTAGTGCG
TGACTTGAATGTTTTGAGAAGCATTTCTCCTTTTTTGCCCTCCCTGTGAG
AGTTTGTATATAATTAATCTTTCAGCTCTAGGATTATTTTTTAAATGCCG
TCTATATTATTAAGTCTTTGCATATTCCTTACAATGCATTTTGGTTAGAC
TCACTCCTCCCTCCTGAAGCTCCACCCCACTGTCTGACTCACCAACTTCA
TGTTTTCTTTGTTTTTAATCTGTAAGTCCCAAATATTCTTAGGAGTTAAA
TCTGCCCTGTAGAACAGCACATAGCCACCAGATGGGTCTCTGTGTTAATT
GCTATATGCTATTAGAAAGTTTCTCCTATTAAAGGCTCATTGGTGTAGGA
TAAATTTTAGCCTTTTCCCTTAAATTTTTGTTAAAATTCTGAACTGTTTT
TTTTTCTTCTTTCAGATGGAAACTTTTTTAACCACAAACTTTGTGTCAGA
TTATCTCTTTATTAGAAAGTTTTAGTAGTTTGTGTCTTCTTTCAGGGGAT
TTTTCCATTTTTTCCATGTTTTCAAACTTATATGCCAAAAGTTGGAGTCA
TACAGGTTTTGGAGGATTAAAGTGTTTATTACATGAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATGAAAATGAAGGCACAACATATCCAAACTAACAATACACAATG
AAAGCAGTGCTAAAAGAAAAGTTCATAACACTAGCAACTTAACAGCACAC
CTGGAAGCTCTAGAACAAAAAGAAGCAAACACACCCAAGAAGAGTAGATG
ACAGGAAATAAACTGAGGGCTGAAATCCCTAAATCACAAAGAAAGAGAAT
AATACAAAGAATCAACAAAACCAAGAACTGTTTTTTTTGAGAAAATCAAC
AACATAGAGAAATCTTTAGCCAAACTAAGTAAAAGACAGAGAAACAGTAT
TCAAATTAACAAAATCAGAAATGAAAAGGGATACATAATAGAAACTGAGG
AAATTCAGAGACATTATACCTTACTTCAAAAGCCTGTACTCCATAAAATT
GGAAACTATAAACAAAATGGATGATTTTCTAGATAGATACCACTTACCAA
AGTGAAATCAAGACCAGGTAAACTATCTAAACAGTCCTGAAGGCCCTAAG
GAAAAAGAAGCAGTCAGTAAAACCCTCACAATCAAAACAAACAAACAAAC
AACAACAACCAAAACACCAAAAAACAGAAATAAAAAAACCAATAACCCAG
CTCCAGGGACAGACTGTTTTAGCATCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k23.b1 MSMg01no063_k23.b1 CHROMAT_FILE:
MSMg01no063_k23.b1 PHD_FILE: MSMg01no063_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:08 2005
         (319 letters)



>mm_chr18_25404444_25405161
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccttctttcattatgcctttgagtgactcttttactagagtagtgcgtgact 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttctt-cattatgcctttgagtgactcttttactagagtagtgcgtgact 263

                                                                       
Query: 65  tgaatgttttgagaagcatttctccttttttgccctccctgtgagagtttgtatataatt 124
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaatgttttgagaagtatttccccttttttgccctccctgtgagagtttgtatataatt 323

                                                                       
Query: 125 aatctttcagctctaggattattttttaaatgccgtctatattattaagtctttgcatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatctttcagctctaggattattttttaaatgccgtctatattattaagtctttgcatat 383

                                                                       
Query: 185 tccttacaatgcattttggttagactcactcctccctcctgaagctccaccccactgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccttacaatgcattttggttagactcactcctccctcctgaagctccaccccactgtct 443

                                                                       
Query: 245 gactcaccaacttcatgttttctttgtttttaatctgtaagtcccaaatattcttaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactcaccaacttcatgttttctttgtttttaatctgtaagtcccaaatattcttaggag 503

                         
Query: 305 ttaaatctgccctg 318
           ||||||||||||||
Sbjct: 504 ttaaatctgccctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)