BAC Information

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BAC

Clone NameMSMg01-064H13
Chromosome18 (Build37)
Map Location 41,473,408 - 41,473,594
singlet/doubletsinglet
Overlap geneLOC677182
Upstream geneKctd16, EG225416
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064H13.T7 (MSMg01no064_h13.b1)MSMg01-064H13.TJ (MSMg01no064_h13.g1)
ACCAG289935AG289936
length1,249736
length of high quality
(start - end)
413 (42 - 454)193 (417 - 609)
definitionCHROMAT_FILE: MSMg01no064_h13.b1 PHD_FILE: MSMg01no064_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:25 2005CHROMAT_FILE: MSMg01no064_h13.g1 PHD_FILE: MSMg01no064_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCCCAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCC
TCAATTTATTTCCCCCCCCCGAAAATGTGGTACATCTACACAAAGAAGTA
CTACGCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAAC
TCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGA
TACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAA
CACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGAGATGAAAGGA
TGGACCATGTAGAGACTGCCCTAGCCCGGGATCCACCCCATAAACAGCAA
ACAAACGCCTGACACCATTGCATACCCTAGCCAGATTTTATTGAAAGGAC
CCAGATGTAGTGGCCTCTTGGGAGACAATGCCGGGGCCCCACAAACCCAG
AAAGGGATGCCTCCCAGTCCGCTTTATGGATGGGATAATAGGCCTCCCCT
AGGTAGGAACCTAAATAAAGTTTTCCTAGGTACCTAAGGGGGCTTTGCTA
CCCTATTTGTGGGAACAAACATTTTTGGATTATCCACTCTCCCCGGAACT
TTTTTCCTCTCTTCGGGCAATAATTTCCTAAGTATGGCTCTATTTCGGCC
TTCCCCGTGAATATAAAGGCCTCTCTGGAACATCTCCTCTCTTTTATATC
CCCCTCCTCCCGTGGTATTACTCTCTTCCCTCATATTGGTGTGTGGGGT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTGCTCTAACTCTAGAGAGAGAGAC
AGCTGAAATGCTTCAAAGAAATTCAAGTGACTTATAAAAATGTTTATGTG
GTCAGGATGTGGAACTCCCTACCGACAGCTGTGTCTCAAACATGTATTTA
CTGGCACTATACAAACCTTTCAATGGATATAAGTTGGGTTGGTCTTTTGG
GTGCAACTTCTTTAAATACCTTGAACCTGATTCTCCGACTTCTGCTGCAA
TTGAATTCCTGACCACAGATTTAATGAGCTAATGTTTTGTATTAATTCAC
TAATTTTTTTTAATTTCCCCCCCCCCGCACAACTACTGGCCCTCTTTGGT
AAACCTTTTACCCCCACTATTTCAAATTGATATATATATATATATATACC
AAAACATACTTATGCCAAAAAAATTAAAGAAGTTACCAAAATTGGAAAGT
ATGTGCCTTCTTGTTGTCACTTACATATTTGAGTTAATGTTCTTTAAAAT
TTATAGAAAATGGGTGATTAACATTGAACTGACTTAGGCCCTAAATTGAT
TGAAAAGTGAGTCTGGAAGAGTCCGGTTTTGAGTACTATGTGACAACTTC
AATTTAACTTATAAGTATTCAACTTTGTTTTGACAAGGATCCGTATGGCT
TGAAAATCTAGAGCTTTTTTAACTCGGGCATTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_h13.g1 MSMg01no064_h13.g1 CHROMAT_FILE:
MSMg01no064_h13.g1 PHD_FILE: MSMg01no064_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:25 2005
         (193 letters)



>mm_chr18_41473189_41473781
          Length = 593

 Score =  300 bits (155), Expect = 4e-86
 Identities = 181/193 (93%), Gaps = 6/193 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatttcaaattgatatatatatatatatataccaaaacatacttatgccaaaaaaatta 60
           |||||||||||||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctatttcaaattg------atatatatatataccaaaacatacttatgccaaaaaaatta 353

                                                                       
Query: 61  aagaagttaccaaaattggaaagtatgtgccttcttgttgtcacttacatatttgagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 352 aagaagttaccaaaattggaaagtatgtgccttcttgttgtcacttacatattcgagtta 293

                                                                       
Query: 121 atgttctttaaaatttatagaaaatgggtgattaacattgaactgacttaggccctaaat 180
           |||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct: 292 atgttctttagaatttatagaagatggctgattaacattgaactgacttaggtcctaaat 233

                        
Query: 181 tgattgaaaagtg 193
           ||||||| |||||
Sbjct: 232 tgattgagaagtg 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)