BAC Information

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BAC

Clone NameMSMg01-064K14
Chromosome18 (Build37)
Map Location 76,242,222 - 76,242,624
singlet/doubletsinglet
Overlap geneZbtb7c
Upstream geneDym, LOC628356, EG667777, Smad7, Gm672, 4833419G08Rik
Downstream geneLOC668184, Smad2, LOC668188, EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064K14.T7 (MSMg01no064_k14.b1)MSMg01-064K14.TJ (MSMg01no064_k14.g1)
ACCAG290074AG290075
length1,2491,270
length of high quality
(start - end)
421 (28 - 448)383 (70 - 452)
definitionCHROMAT_FILE: MSMg01no064_k14.b1 PHD_FILE: MSMg01no064_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:46 2005CHROMAT_FILE: MSMg01no064_k14.g1 PHD_FILE: MSMg01no064_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCTATGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAC
AGTTCTCTCCTGGGCGACAAGGAGACTTGCTGCAGGTAGGCAAGCAGCCA
TTCTGCCTACCCGGATCCAGCTGACACCCCGGTGCTGAGAAAAGGAAGGC
CCAAGGACAGGACTTCAGAATGGGGGTGACCAAACTGGGGGCTAGTATGG
TGGGAACTTTGAGAGGGGAATGGTATAGTTGGAGATCCTAAGAGACAGAA
AAGAGGTTCTCTTCCTTTGCTCAGGTGACAGACAGATGACAACCAGTGGG
TAGCCTCTGCAGACGTTTGGTTTGGACTTTGCACAATGACTTTCTACCAG
TCACAGACATGTCCAGGACTATCTGAATGGCCTGGGTGGTAAACTGGTCT
CCAGCTGTGGACTTCCAGCATTACTCTCCTTCCCCACCCCCTATCCCTAT
TTTTTTTCCCCCCCCCGATTCNCACTAAGACCTCGGTAATAAAAGATTCT
TCCTGCCTGTGACCTCGGCACCTCCCACAGCCCCAGAACGCACACTCATG
TTTCTGAACTTGGGTCAGAATATAAGCAATATCAAATTCAACAGGTTATC
ACAGTCCCATATACATAGAAAATGACCATGGTCCCACATGCGTGCAAAGG
AGAACATTTTGGTTGGAGACTGTGCATAGAGAGCCGTTTATTATGCATAA
TCTTTCCTAAGGAGTATAACGAACTTGTTGTGCATTTGCGATAAAAACAA
CTGATTCCCAACTTTCCGAGCCTGTGTTTATATTTTAAAGATTCTGGTTT
TGTTTCTCGTCATATTCTACATATTTGGTTTGTTTCTTTGAAAATGATAC
TTTAGTGTGATTTCTGTTGCTTCTTTTCTAAAATCTTTTTGCTCTTTTTA
TTTATTTCTCTTTATTTATTTCTCATTATCTATATCTTCGTTTTCTTTTT
TTTATTTTTTTATTATATTTATTATTTTTCTCATTTCCATTTATTTTATT
TTTTAATCTTTCTTTATCTCTTTATTCTTTATCTTCTACTTTCTATTTTT
TTTGCATCTTTTCTCATTTTCTTTTTCTATTTCTATTATTATTTTCTTAT
CTTATTTCNCTCCATGTCTTTCTGTTTTTTTCTCTGTCTTTTTACTTTTC
TTTATTTTTTATCATATTTGTTTATCTATTTTATCTCTTATTTATCTATA
TTATATCTCTTCTTATTTTTTTCTTATATTCATTTTATGCTTCTTTTTA
NNNAAAAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACAGAAGTACCA
GTGAGTACAGCTTTACAAGGTAAGTCTGCCCCTGAACTTTCTAAGGAAAT
TCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGC
CTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAG
TGGAAAATAGCTTTACAAGGTATGTTTGGCCTTAAACTTTCTCTAGTGTT
AGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGC
GGATTCTGGATGAAGTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAG
AATATAGGAGCAAAGAGAAAATATGGTTCACAAAATAAGTATACAGGCCT
TTTTTTTTTCTCCCCCCCCCGAGAAAAAGTTTAGGTCAGGAAAAAATACC
TGGGGAAAAATTAAAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCA
ATTAGAGGAGCCAGTTCTTAGTAGTTCTGAATCAGATAAAAAGGCTATTA
GGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGACAATAATGA
CAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTAGAGTT
ATAGATCAAGATTAAAAAGGGGAACTTCAGGTTCTCTGTTCTTGTCCTCA
AGTTGCCTTTTCTATATCACAAGGGGACAAAATAGCTTCACTAAAAATTT
TGCCAAGCCTACATGGCTGTTTTTTCCTCCTCCGGAATTCCTAAAGCTGC
TAGAGGTATTGTTTCTTACTGCAAATGATTCTGATTATTTAATATCGCCT
TTTACATTGTTGTCATAATTTATTCTACTCACGTAAGGTTTAAATCCCTC
CTGGTTGTCTGTCCTTTTTAGGGTTGTAATATATTGATTTTTTCTATTTT
TTCCCTCTTTTGATTAAAAACCTACTATTTCTTTGGTTTTTTTTATTAAT
TATATTTTCTCCCTTATCTCTTAATGTATATTTCTAATACCCTTCTGCTA
TTCTTTCCTTTCTTTCTTTCAACCTTTTTCTTTAATACTCTCTTCCCTTT
TAATATATTCTATTCTATCTGTGTTTTTTGATTTACATATATATATTGAT
CTCTTCTCTCCTCATTACTTTTATTTCTTATTCTCCCTCAATATCGCTCT
ATCGCATCTAACTATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_k14.b1 MSMg01no064_k14.b1 CHROMAT_FILE:
MSMg01no064_k14.b1 PHD_FILE: MSMg01no064_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:46 2005
         (421 letters)



>mm_chr18_76242008_76242824
          Length = 817

 Score =  721 bits (373), Expect = 0.0
 Identities = 397/407 (97%), Gaps = 4/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcacagttctctcctgggcgacaaggagacttgctgcaggtaggcaagcagccat 74
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcacagttctctcctgggcaacaaggagacttgctgcaggtaggcaagcagccat 274

                                                                       
Query: 75  tctgcctacccggatccagctgacaccccggtgctgagaaaaggaaggcccaaggacagg 134
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 275 tctgcctacccggatccagctgacacccccgtgctgagaaaagggaggcccaaggacagg 334

                                                                       
Query: 135 acttcagaatgggggtgaccaaactgggggctagtatggtgggaactttgagaggggaat 194
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 335 gcttcagaatgggggtgaccaaactggggactagtatggtgggaactttgagaggggaat 394

                                                                       
Query: 195 ggtatagttggagatcctaagagacagaaaagaggttctcttcctttgctcaggtgacag 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtatagttggagatcctaagagacagaaaagaggttctcttcctttgctcaggtgacag 454

                                                                       
Query: 255 acagatgacaaccagtgggtagcctctgcagacgtttggtttggactttgcacaatgact 314
           |    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 a----tgacaaccagtgtgtagcctctgcagacgtttggtttggactttgcacaatgact 510

                                                                       
Query: 315 ttctaccagtcacagacatgtccaggactatctgaatggcctgggtggtaaactggtctc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttctaccagtcacagacatgtccaggactatctgaatggcctgggtggtaaactggtctc 570

                                                          
Query: 375 cagctgtggacttccagcattactctccttccccaccccctatccct 421
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagctgtggacttccagcattactctccttccccaccccctatccct 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 817
Length adjustment: 9
Effective length of query: 412
Effective length of database: 808
Effective search space:   332896
Effective search space used:   332896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)