BAC Information

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BAC

Clone NameMSMg01-064L13
Chromosome18 (Build37)
Map Location 85,543,441 - 85,543,841
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L13.T7 (MSMg01no064_l13.b1)MSMg01-064L13.TJ (MSMg01no064_l13.g1)
ACCAG290113AG290114
length1,244732
length of high quality
(start - end)
423 (32 - 454)---
definitionCHROMAT_FILE: MSMg01no064_l13.b1 PHD_FILE: MSMg01no064_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005CHROMAT_FILE: MSMg01no064_l13.g1 PHD_FILE: MSMg01no064_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGTCACTGCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTAAATGGATTAATTCACCATTTATAATATGCTATATTTTAACATGACA
AAAATAAAGAAATGTCTTTTAAGAACTAATACCCTCTTCAAAATATAGAG
CACACTTTGTAGAACACCCACACACAAACACACATACAGTGTGTGAGCTA
ACAAAGTAAGTATGTAAGGCTAAGACTATTTCATTCCTAACTTATGTTTT
CATCCTTGAAAACTTTAAAAGAGGTTGTTAACTTGAATTAATAGTTTATA
TGCTAACTAATCTATCTATCTATCTATCTATCTATCTATATATATTAATT
TTTATTAGGTATTTTCCTCAATTACATTTCCAAGGCTATCCCAAAAGTCC
CCCATACCCTCCCCCCACCCTTTCCTACCCACCCATTCCAATTTTTTGGC
CTTGTTTTTTCCCCCCCCCCGGGGCATATAAAGTTTGTGTAAAAAAAGGA
GGTCTCTTTCCAGTGATGGCTTACTAGGCCATCTTTTGATACATATGCAG
CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAAGGTTGTTCCACC
TATAGGGTTGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCT
GTTAATACCTTAGTGGGAATGGATTTTTACAGTTCATACTTTTCAAGTGT
TGATGAAGTGAGACACACCAGGATAATCTTTGAATTTGACTCAAAAAGAT
ATCTCTGTACATAGTGTGTGTAGTATTTATTTCAACATCAGTCAAAATTT
CTCCAGTGCAAAATTGCCAATTTCCTAATTCCAGTGCCAAAAAAGTTTTC
CGGTAACAGCATAAGGTTACTTACAATTAAAGGTGTTTTGTGAACAAGTT
TAAAGAATTTGAATTCAATCCCTTGTATTCCCCCGGTGGAAATGGAAAAA
ATGTACTCCCCCCAATTGGTTTTTTTTTTATACATTCCCCCAAATTTCTC
TACAAAATTGGTGTTTGACTTGTTTCATTCTCTTTTTGTCCTATCTTATT
AAATAATCCTTTTTTAATTCTTAATATCTCCCCTAAATGTCTTTTAGAAT
ATTGTATACCCTCTCTTGTTTGTAACATAATTAAACATTCCTCTTCTTAT
TGTTATACATTTTTATTAAACATGGTGAGAAATCCATTTTCTAGTAAGAC
TAACTACTCTCTATGGTGACACCCCCTACCATAAAAAATAATTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAAAAAAGCAAAGGCAGGGAAAAGAGAGC
AAGGAGATGAGATTATGAAAAGGGGGGCCAAAGACCATAAGCTTCAGGGA
CCCGGGGGAACAGCTCAAGAGAAAAACTTGAAGGGAAAAAGCAAGGCTTG
AAAAAAGGAAACACAGAAGGGGACATTTCATATGGGAATAAAAGAGTATC
CGCTCATCAAAGGCACATTTCCCAAGAAAAAGGGAGGATGACCCATTTTC
TCTGCAAAGGGGGCGTTGTCCAGCACGACCATATGCCCCCTAGGACCACA
TGTTTTTTATAACCCCACCCCCCCAGGATCCTCAGGGAACTAGGGGTTGA
AATCCAATCCCCCGGATTTTGGAAATTCAAATTTACCTTTTTTTTTTTAA
CCCAGGGGGGAACCCACTCAAAAAATTATTTAAAAAACACTATTCATTAC
CTTCAAGGGAAAGTAGGAACCGGGAAAATAGGTGGCCTCATGGGCAAACA
TACTGGGAATAAAAAAAAATATCTAACAAAAAGTGACTGAAAAGTTGGGA
AGTTGGCATCAGGCTGGTGAATTTAAGGGGGGGAAGGCATAGTTGGAAAT
TTGGGTGGAATTTCTGGAAAGCACACGCAAAGGCTGGGGCTTTACTGGTT
AACAAACATAGGCAATGGCCCAGGGGGAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l13.b1 MSMg01no064_l13.b1 CHROMAT_FILE:
MSMg01no064_l13.b1 PHD_FILE: MSMg01no064_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:53 2005
         (423 letters)



>mm_chr18_85543364_85544186
          Length = 823

 Score =  721 bits (373), Expect = 0.0
 Identities = 397/409 (97%), Gaps = 8/409 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggaattctaaatggattaattcaccatttataatatgctatattttaacatgacaaaaat 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaattctaaatggattaattcaccatttataatatgctatattttaacatgacaaaaat 419

                                                                       
Query: 75  aaagaaatgtcttttaagaactaataccctcttcaaaatatagagcacactttgtagaac 134
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 418 aaagaaatgtcttttaagaactaataccttcttcaaagtatagagcacactttgtagaac 359

                                                                       
Query: 135 acccacacacaaacacacatacagtgtgtgagctaacaaagtaagtatgtaaggctaaga 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acccacacacaaacacacatacagtgtgtgagctaacaaagtaagtatgtaaggctaaga 299

                                                                       
Query: 195 ctatttcattcctaacttatgttttcatccttgaaaactttaaaagaggttgttaacttg 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctatttcattcctaacttatgttttcatccttgaaaactttaaaagaggttgttaacttg 239

                                                                       
Query: 255 aattaatagtttatatgctaactaatctatctatctatctatctatctatctatatatat 314
           |||||||||||||||||||||||||||||||||| ||| |||  ||      ||||||||
Sbjct: 238 aattaatagtttatatgctaactaatctatctatatatatat--at------atatatat 187

                                                                       
Query: 315 taatttttattaggtattttcctcaattacatttccaaggctatcccaaaagtcccccat 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 taatttttattaggtattttcctcaattacatttccaaggctatcccaaaagtcccccat 127

                                                            
Query: 375 accctccccccaccctttcctacccacccattccaattttttggccttg 423
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 accctccccccaccctttcctacccacccattccaattttttggccttg 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)