BAC Information

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BAC

Clone NameMSMg01-064N15
Chromosome18 (Build37)
Map Location 61,490,314 - 61,490,719
singlet/doubletsinglet
Overlap genePpargc1b
Upstream geneEG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279
Downstream geneLOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N15.T7 (MSMg01no064_n15.b1)MSMg01-064N15.TJ (MSMg01no064_n15.g1)
ACCAG290206AG290207
length1,270742
length of high quality
(start - end)
420 (28 - 447)172 (420 - 591)
definitionCHROMAT_FILE: MSMg01no064_n15.b1 PHD_FILE: MSMg01no064_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005CHROMAT_FILE: MSMg01no064_n15.g1 PHD_FILE: MSMg01no064_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCACTGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTG
TACCACTTAGCATCTTACAAAGCTGTGTGTCCTTTGCTTTCATCTTGCCT
CTGGCTAGAGGACTATCCCAGCCCCCCCGGCAAAGTCCCCACCCCAGGGC
CAAAGCCCCAGTGTCCTGCTTGGGGAGCCACACAGCTGGATCCAGATGTT
TTTTCCCCGGCAGCCAGTGCAGAGCCCACCATCTCCTCATCTATGATTCG
GATCTCCCCATCGGTGTGTCTCCTCTTTGATCCGCTCTCATCCGTATCAC
ATTTGACAGCAGTTTGGTTTTTCAGTAACTCCAGCTCTTGGCGTCCGCAG
CCCACAGCTTAGTTTTCACGGAGCTCTCTCGCCTCTTCTACTAACATGTT
CTAGTTAAGAACGATTTAAGTTTTGTAAGGCTGGTAACAAATGATTTTTT
TTTTACCCCCCCCCCTAGNAGATCACAACCTCTAAAAAGAAAGGGTGGGT
GAGCGGTGACGGTGTGCAGGACAGAAGCACACCCAGTTGGCTGGTCAGCT
GGAGACTGGGTATCGCTCTACCATAGGTCTGGTAGGATTATGTTTGTCCA
TATCCTACAGATACTCTTAATTGTTTATAAGTTCTGTTTGGTATTGGTCT
TGTGTTTTTCATTTTTGATTCTATTCCTTGTCCCTATTCCTATTATTATT
TCCCTTATCTTATTGTTCATTTGTTTTCTTTTATTTCTACACTTTTTTAT
TTCTTGTTTATTTTTTATTAATTTTTTCTTTTTTTTTTCTTTTTAATTTT
TTCTACTATATTTTTCTTCTTCTTTTTCCTTTTTCTTTATTATTTATATT
TATATTTATATTTTTCTTTCTTATTTTTATATATTCTCATCCTACTTATT
ACTTCTTTTTTTTTTATTTTTTTTATTTCTTTTATTTTTTTTTTCATTTT
TTTATTTTTACATTTTTTCTCCTAACATTTTTACTATCTCTTCATTTATT
TCTTTTGATTTCTTTTTTATTATTCTAAATTCTTATAATCTCTTTTTTTT
TTACTTTTTTATTCTTTCTCTTTCCCTTCTTTTTTCTATTCACATTCTAT
TAATCATTCCATTATCACTTTTACATTTTATTTCCCTTATTTTAATAACT
ATCATTTATCCTATTTATTAATCGCACTTTTCCTTTCATTCATTTATTCA
TTCTCTATTTCTTTCACATTTTCTATTCTCTATACTCTTATTNTCTCTCA
TCATTTCTTTACTTATCTTA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTACCTGCTACAATAATTTAAAACTGGA
ACATCATTCAGACTGCTTCCAAAAAGAATTGTTTTCAAGGTTCCAAACAA
ATGTCTACAAACTCAAATTGGAGCCAGGCAGTGGTGGCACACACCTTTAA
TCCCAACACTGGGGAGACTGGTGGATCTGAGGTCAAGGTAAGGTAAGCCT
CCTCTACAGAACGAGTTCCAGGATAGCCATGGCTACACGGAGTCACCTTG
TCTCAAAACAAAAAAACCAAAAAAACAAAAACAAAACAAACAAACAAAAA
ACCCCATTTAACCCAAAAAACCTCACCAAAAGAAAACCAGTCAACAAAAA
GCAAACAAACCCACACCAGAGAAAATCTTCTACTTTAGAAAACATTATTT
CCAAATTAACAATTATTACCATTAAACTGAAGGTTTTTATTTTCATTTCT
AGCGTTAAGGTCTCATGGTCCCAGGGTAGCCTTGAACTTGGCCAAAGATG
ACCCAAAACCCCTGATCCTCCAGCCTCCACCTCCTAAATGCTAAGATTAC
AGGCATGGATCATGTTACAACTGAAAGTAAAATTTAACTGGTAGGAAAAC
GAGATTCACACGAAAACTGAGTCCCACTCTGCCGTGCATCCGAGTTAGCA
GTAACGCCGCATCCTTCCCTGCGCGTGTCCTCAAAGTCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n15.b1 MSMg01no064_n15.b1 CHROMAT_FILE:
MSMg01no064_n15.b1 PHD_FILE: MSMg01no064_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:07 2005
         (420 letters)



>mm_chr18_61490099_61490922
          Length = 824

 Score =  681 bits (352), Expect = 0.0
 Identities = 392/406 (96%), Gaps = 4/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctgta-ccacttagcatctt-acaaagctgtgtgtcctttgctttcatcttgcct 73
           |||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 621 gaattctgtacccacctagcatcttaacaaagccgtgtgtcctttgctttcatcttgcct 562

                                                                       
Query: 74  ctggctagaggactatcccagcccccccggcaaagtccccaccccagggccaaagcccca 133
           ||||||||||||||||||||| |   | ||||||||||||||||||||||||||||||||
Sbjct: 561 ctggctagaggactatcccagtcattctggcaaagtccccaccccagggccaaagcccca 502

                                                                       
Query: 134 gtgtcctgcttggggagccacacagctggatccagatgtttttt--ccccggcagccagt 191
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 501 gtgtcctgcttggggagccacacagctggatccagatgttttttccccccggcagccagt 442

                                                                       
Query: 192 gcagagcccaccatctcctcatctatgattcggatctccccatcggtgtgtctcctcttt 251
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagagcccaccgtctcctcatctatgattcggatctccccatcggtgtgtctcctcttt 382

                                                                       
Query: 252 gatccgctctcatccgtatcacatttgacagcagtttggtttttcagtaactccagctct 311
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gatcagctctcatccgtatcacatttgacagcagtttggtttttcagtaactcgagctct 322

                                                                       
Query: 312 tggcgtccgcagcccacagcttagttttcacggagctctctcgcctcttctactaacatg 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcgtccgcagcccacagcttagttttcacggagctctctcgcctcttctactaacatg 262

                                                         
Query: 372 ttctagttaagaacgatttaagttttgtaaggctggtaacaaatga 417
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctagttaagaacgatttaagttttgtaaggctggtaacaaatga 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 824
Length adjustment: 9
Effective length of query: 411
Effective length of database: 815
Effective search space:   334965
Effective search space used:   334965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)