BAC Information

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BAC

Clone NameMSMg01-065C04
Chromosome18 (Build37)
Map Location 4,855,967 - 4,856,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C04.T7 (MSMg01no065_c04.b1)MSMg01-065C04.TJ (MSMg01no065_c04.g1)
ACCAG290417AG290418
length684687
length of high quality
(start - end)
81 (140 - 220)348 (70 - 417)
definitionCHROMAT_FILE: MSMg01no065_c04.b1 PHD_FILE: MSMg01no065_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:33 2005CHROMAT_FILE: MSMg01no065_c04.g1 PHD_FILE: MSMg01no065_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATAATTGCGGCGCTATACGACTCCTATAGTCAGAGATGCGCGGAAT
TATAAACGTTTCGACACAAATGCCATCAAAACCTGTCTCTGGCGTCCCCG
TTTCTGTAGGGAAGTGGGACACAGGACAGTAGCGAAGACGACTAGGTCTG
GGTGGGAGAACCAGGGAATGCAGGTGAGGCTAAGCAGAGCAAGAGCCACG
CTAGACTGAGTGATGGCTCAGCTCGCCGAACACGAGCACTTGATGCTCTT
GCAGAGGACTTGAGTTCAGATCCCAGCACCCATAACGGGTAGCAACTCAT
AGCTGCCTGTAATCTTTTTGCATGAAATTGGCCTCTCCTGGTCTCCACAG
GCATGTGAGCATACACATAATAAAATATACTCGTATACAAACCAAAAGTA
AAATAAATGTTAGAGTTAAAAAATATAGGATCTCGAGAGAAATAAACAGC
GATTGTCCTTGTATTTTTCTGGTGATAAATTTGGAATACAAGCTCATACA
CTCAGGAGCCAAAAGTTAATAGAAACAGTTGTTAGGCCGAGCTGACTCGG
GCATCTTCCTCAGAACACAGCAGCCTCTCACCTTGGTTTTCCAGCAGCCG
TGCCTCTCATCTTTTAATGGAGTAGAGTGTTTGGGTGATCCCTTGCAGTC
AGTAGGCCACTTTATTTTACATTAGAAAAACCTN
CCCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGCTGTTTGCTGGTAATGGACAAAGACA
AATGACAAAGGCAATATGTTTGTCTTCAGAAATTGTTGGGCTCAGTGTCT
TTCTTGGCATATGACAGGGGTGTGAGGTAATGTATGGGTGCGTGAAAGTG
GTCTCGGTTTCAAGCAAATACCACAACTTCAAGAGGAGACAGATTGATTG
CTTAATGAAATATTAATGTTGTATTGACAAGTCTCTTCTAAGATACAAAC
TACATTCTTTTTTGAAATCTGTGCATGTGTGTGTGTGTGTGTCTGTGTGT
GTGTGTGTGTGTGTGTCTATGTGTGTGTGTGTCTCTGTGTGTGTGTGTCT
ATGTGTGTGTGTTTCTGTGTGAGTGCAGCACATATTCACTGAGGATGAAG
CAGGCAGGGTTGAACCTGGAGCTCACAGCATGTAACGCAGGATCGTCTTT
CTTTCTGTACCCATGTTGAGTCTTGACCTATGGCATCACTTGTGTTTATA
ATGTGTGGGAAACTCCCTCCCTCCCATTCCACCTCTTCAGCATGGTCCTT
TGAGCACTATGTTTTAGTGGAATGAACCACTTCTTTTTGCCATTCTGCGG
CTTTCGTCTTGGCTGGTCTTTGTATACATTCGCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c04.g1 MSMg01no065_c04.g1 CHROMAT_FILE:
MSMg01no065_c04.g1 PHD_FILE: MSMg01no065_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:33 2005
         (348 letters)



>mm_chr18_4855767_4856515
          Length = 749

 Score =  538 bits (278), Expect = e-157
 Identities = 293/298 (98%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagctgtttgctggtaa-tggacaaagacaaatgacaaaggcaatatgtttgtcttca 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagctgtttgctggtaaatggacaaagacaaatgacaaaggcaatatgtttgtcttca 260

                                                                       
Query: 60  gaaattgttgggctcagtgtctttcttggcatatgacaggggtgtgaggtaatgtatggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaattgttgggctcagtgtctttcttggcatatgacaggggtgtgaggtaatgtatggg 320

                                                                       
Query: 120 tgcgtgaaagtggtctcggtttcaagcaaataccacaacttcaagaggagacagattgat 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatgaaagtggtctcggtttcaagcaaataccacaacttcaagaggagacagattgat 380

                                                                       
Query: 180 tgcttaatgaaatattaatgttgtattgacaagtctcttctaagatacaaactacattct 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttaatgaaatattaatgctgtattgacaagtctcttctaagatacaaactacattct 440

                                                                     
Query: 240 tttttgaaatctgtgcatgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgt 297
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 441 tttttgaaatctgtgcatgtgtgtgtgtgtgtctatgtgtgtgtgtgtgtgtgtgtgt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 749
Length adjustment: 9
Effective length of query: 339
Effective length of database: 740
Effective search space:   250860
Effective search space used:   250860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)