Query= MSMg01no065_d02.b1 MSMg01no065_d02.b1 CHROMAT_FILE:
MSMg01no065_d02.b1 PHD_FILE: MSMg01no065_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:37 2005
(578 letters)
>mm_chr18_20117237_20118214
Length = 978
Score = 926 bits (479), Expect = 0.0
Identities = 537/581 (92%), Gaps = 39/581 (6%)
Strand = Plus / Plus
Query: 1 cagctgttctggcccaaacttctgtctaagctgactgattcaatccagcttctcactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cagctgttctggcccaaacttctgtctaagctgactgattcaatccagcttctcactgaa 293
Query: 61 ttgctctgcttgacctcaaactaactctgacctctattctaatctggctctttccctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgctctgcttgacctcaaactaactctgacctctattctaatctggctctttccctctg 353
Query: 121 ctgacctgcactgcactgcatgaagccataaatgagctcaactctgctgcactgcactca 180
|||||||||||||||||||| ||||
Sbjct: 354 ctgacctgcactgcactgca------------------------------------ctca 377
Query: 181 cggtactgactcccaactggctcagttcccaactccccttctctcccctgagttgttctt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 cggtactgactcccaactggctcagttcccaactccccttctctcccctgtgttgttctt 437
Query: 241 aagaagcttctttc---tctgttctcgtgagagttccgtgactctgactcacactgtcta 297
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagaagcgtctttccgatctgttctcgtgagagttccgtgactctgactcacactgtcta 497
Query: 298 atctttctctgatttgttactttgtctgcctctcagacatcactatcaaacactgtttct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atctttctctgatttgttactttgtctgcctctcagacatcactatcaaacactgtttct 557
Query: 358 tctacaaactaaacttacctacgcttatttgtcattaaaggtatatactaaagtcatcaa 417
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 558 tctacaaactaaacttacctacgcttatttatcattaaaggtatatactaaagtcatcaa 617
Query: 418 tgtatcattgtttttgtctctgtgctcgctctttcttgggcctcttttgtttggcatttc 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 tgtatcattgtttttgtctctgtgctcgctctttcttgagcctcttttgtttggcatttc 677
Query: 478 ctcaagtgaatttacgttattatatgtctgttttaacttgtctatgatgattcatatttc 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctcaagtgaatttacattattatatgtctgttttaacttgtctatgatgattcatatttc 737
Query: 538 aaagaaacaatccaataggataggagtaatttgtaagactg 578
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaagaaacaatccaataggataggagtaatttgtaagactg 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_d02.g1 MSMg01no065_d02.g1 CHROMAT_FILE:
MSMg01no065_d02.g1 PHD_FILE: MSMg01no065_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:37 2005
(514 letters)
>mm_chr18_20216205_20217120
Length = 916
Score = 975 bits (504), Expect = 0.0
Identities = 513/516 (99%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 1 acccctgggagtgactaggccatcgaggagtgagtgc-ggggtggggtggggtggggaag 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 716 acccctgggagtgactaggccatcgaggagtgagtgcgggggtggggtggggtggggaag 657
Query: 60 aatgccccagattagttttctcagggtcccttgtacaaggaaaaag-tcactattctagt 118
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 656 aatgccccagattagttttctcagggtcccttgtacaaggaaaaagttcactattctagt 597
Query: 119 tgcaaaatagcagccaaattgatactgcccttccactcttagcctgcaacagtggctcaa 178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 596 tgcaaaatagcagccaaattgatactgcccttccactcttagcctgcagcagtggctcaa 537
Query: 179 gatggctttgaaggaagtctggaggaacccagggaaccaaagtgtgtggaggtgtggacg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gatggctttgaaggaagtctggaggaacccagggaaccaaagtgtgtggaggtgtggacg 477
Query: 239 tgaggggtaccaaaggtcgaggcatctactcatctcctttctcaaggaattcctgcattt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgaggggtaccaaaggtcgaggcatctactcatctcctttctcaaggaattcctgcattt 417
Query: 299 ttaattactaaaaatatgattggttactggaagttccagggaatgaatggtctaaacttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttaattactaaaaatatgattggttactggaagttccagggaatgaatggtctaaacttt 357
Query: 359 agatcagaattcccataggctattcataaacacaggttgggaccaatgccttgcagtcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agatcagaattcccataggctattcataaacacaggttgggaccaatgccttgcagtcag 297
Query: 419 gattttatagctaaagaaactgagcctagggcaaataatcgccataaaatattcttctga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gattttatagctaaagaaactgagcctagggcaaataatcgccataaaatattcttctga 237
Query: 479 tgataaagagtggactttggttgataccgaatgagg 514
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgataaagagtggactttggttgataccgaatgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 916
Length adjustment: 10
Effective length of query: 504
Effective length of database: 906
Effective search space: 456624
Effective search space used: 456624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
