Query= MSMg01no065_j23.b1 MSMg01no065_j23.b1 CHROMAT_FILE:
MSMg01no065_j23.b1 PHD_FILE: MSMg01no065_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:11 2005
(397 letters)
>mm_chr18_61187771_61188567
Length = 797
Score = 729 bits (377), Expect = 0.0
Identities = 392/397 (98%)
Strand = Plus / Plus
Query: 1 gataactttaaagaccctggggatgtcatccagattaacacggggggctaccaaaaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gataactttaaagaccctggggatgtcatccagattaacacggggggctaccaaaaagtg 260
Query: 61 acagggtttgagcaagcccgtggagttagcactatgccaagatctgcaaaggccaggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagggtttgagcaagcccgtggagttagcactatgccaagatctgcaaaggccaggtgc 320
Query: 121 tcactgcggatccaaacctagcaccaagagaggtgggccagtctgtatacttagtggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactgcggatccaaacctagcaccaagagaggtgggccagtctgtatacttagtggaag 380
Query: 181 gaccagacaagtgtttgagctttcctgggttccctccctgcccagaacacagaatagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccagacaagtgtttgagctttcctgggttccctccctgcccagaacacagaatagatg 440
Query: 241 tgaaaactctttgtaaagggcaaagagctatggaaggccccaacttcccaccccaaaagt 300
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tgaaaacactttgtaaagggcaaagagctatggaagcccccaacttcccaccccaaaagt 500
Query: 301 agaactgagctatttgtagaagtggatggtagagctctctgttgccaacaagaggaatgt 360
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 agaactgagctatttgaagaagtggatggtagagctctctgttgggaacaagaggaatgt 560
Query: 361 tgcctgatgggaagtcacatgtcaaagaacaccctag 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctgatgggaagtcacatgtcaaagaacaccctag 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_j23.g1 MSMg01no065_j23.g1 CHROMAT_FILE:
MSMg01no065_j23.g1 PHD_FILE: MSMg01no065_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:11 2005
(380 letters)
>mm_chr18_61363116_61363901
Length = 786
Score = 654 bits (338), Expect = 0.0
Identities = 370/384 (96%), Gaps = 6/384 (1%)
Strand = Plus / Minus
Query: 1 cccgtttctattgtctttctcacttttagcacttctgtttgtttcattcttggtttactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cccgtttctattgtctttctcacttttagcacttctgtttgtttcattcttggtttactt 525
Query: 61 tttcagacatttttttaaaatttgcttttattttccttagtgccacagaggtgaagtttg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 524 tttcagacatttttttaaaatttgcttttattttccttagcgccacagaggtgaagtttg 465
Query: 121 gatctggttattattagttacagtgtttcagtatttctttttcttaccttagaaaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gatctggttattattagttacagtgtttcagtatttctttttcttaccttagaaaaatct 405
Query: 181 cttgaccaaaggctgctccagacagg------ctcaggcaggctcaggagagcaggaagt 234
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 404 cttgaccaaaggctgctccagacaggaagtaactcaggcaggctcaggagagcaggaagt 345
Query: 235 gagaagacagacttattttaagttaaagatcagcccgctggcctgtttaagttgctcagg 294
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gagaagacagacagacgctaagttaaagatcagcccgctggcctgtttaagttgctcagg 285
Query: 295 gtcagttgtcctcttgatctgactctcctcctaaagaccatcaaaataattatcactttt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 gtcagttgtcctcttgatctgactctcctcctaaagaccatcaaaataattattactttt 225
Query: 355 ctcttgttcaacctaaataatggg 378
||||||||||||| ||||||||||
Sbjct: 224 ctcttgttcaacccaaataatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 786
Length adjustment: 9
Effective length of query: 371
Effective length of database: 777
Effective search space: 288267
Effective search space used: 288267
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
