BAC Information

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BAC

Clone NameMSMg01-066D02
Chromosome18 (Build37)
Map Location 10,026,195 - 10,105,687
singlet/doubletdoublet
Overlap geneUsp14, Rock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1
Downstream geneLOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066D02.T7 (MSMg01no066_d02.b1)MSMg01-066D02.TJ (MSMg01no066_d02.g1)
ACCAG291224AG291225
length677675
length of high quality
(start - end)		429 (57 - 485)388 (19 - 406)
definitionCHROMAT_FILE: MSMg01no066_d02.b1 PHD_FILE: MSMg01no066_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:54 2005CHROMAT_FILE: MSMg01no066_d02.g1 PHD_FILE: MSMg01no066_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,026,195 - 10,026,623)(10,105,304 - 10,105,687)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTATGAGCTGGTTCTCTCCTCCCACCATGTGGGTAGGTGCTACA
GATGACCTCAGGCGGCACAACAAGCACACTCACTTTGCTGGCCCACCCAA
AATGCTGCTTACAACAGGAAAACACAAGGGTTCGTAAGGAAGTAGAGAAA
GTAGAATCCTGTGCAACAGTGGTTGCTATGGGACACTGGCTCAAAAAAAT
TTAAGCAGAGAATTACCATATTTTTTAAAAGATTTATTTATTATTATATG
TAAGTACAGTAGCTGACTTCAGACACACCAGAACAGGGCATCAAATCTCA
TTATAGGTGATTGTGTGCTACCATGTGGTTGCTGGGATTTGAACTTGGGG
CCTTCAGAAGAACAGTCAGTGCTCTTACCCGCTGAGCCATCTTGCCAGCC
CGAGTATTACCATATTAAATTTCTCACCCAGAAGTACATAAGCAAGGACT
CAAAGTAGCTAACTGTGTACTCCTTCAGAGCAGCATCATTCAGACTAAAG
TTGAGAAAGGACTAGGATGAGGCCAGTGGGAAAGCTGCTGCCTAGCACGT
GTGAGGTTCTGGGGCTGATTCCTGTGGCAAGAGGTAAAGGTATATTAATG
GAAACGTGAGTTAAAAAGAACAGGCCC

CTCCTATAGTTTCGAGATCCGCGGAATTCACAAAGACCCATCTGCCTCTG
TCTTCCAAGTGCTAGGATTAAAGGCATGTGCCACCATCTTTGGCTAGAAT
TTTATATTTTCATGCCAGTATTGCAATTATATTACATTTTAAAGTTTTTT
ATGTCATTTGATAACAATCATTTTAATTCTAGTTTATTTTATATATGTAC
TTATATGTATGCAATCTTATGTATATATAAGGCTCTTCATAAAGTATAAA
CAATGTATTCAGTGATATAATATATACTGGAATATCTGTCATAAAAATAC
ACAGCTTGGGGGCTGGAGAGATGGCTCAGCTGGTAAGAGCACTGACTGCT
CTTTCAAAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAA
CCACCCATAAGGAGACCCTACACCCTCTTCCTGCACGTCTGAAGACAGCT
ACAGTGTACTAATGTATAATAATAAATACAAATCTTTTAAAAAATACACC
ACTTAACTAAAGAAAAAAGCATCCTATATTGCTAAATATACATATATTTC
TATAGATACACCTGAAAATATATGTATGATATGTTTGGCTTCATCTTAGA
ATATTGATTCATAGATTGACCTAAAAGGAAGACCATGTATTTGTATAACA
ATCAGCTTAAGTCATAAAAAACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_d02.b1 MSMg01no066_d02.b1 CHROMAT_FILE:
MSMg01no066_d02.b1 PHD_FILE: MSMg01no066_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
         (429 letters)



>mm_chr18_10025995_10026823
          Length = 829

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgagctggttctctcctcccaccatgtgggtaggtgctacagatgacctcaggcggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgagctggttctctcctcccaccatgtgggtaggtgctacagatgacctcaggcggc 260

                                                                       
Query: 61  acaacaagcacactcactttgctggcccacccaaaatgctgcttacaacaggaaaacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaagcacactcactttgctggcccacccaaaatgctgcttacaacaggaaaacaca 320

                                                                       
Query: 121 agggttcgtaaggaagtagagaaagtagaatcctgtgcaacagtggttgctatgggacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggttcgtaaggaagtagagaaagtagaatcctgtgcaacagtggttgctatgggacac 380

                                                                       
Query: 181 tggctcaaaaaaatttaagcagagaattaccatattttttaaaagatttatttattatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctcaaaaaaatttaagcagagaattaccatattttttaaaagatttatttattatta 440

                                                                       
Query: 241 tatgtaagtacagtagctgacttcagacacaccagaacagggcatcaaatctcattatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtaagtacagtagctgacttcagacacaccagaacagggcatcaaatctcattatag 500

                                                                       
Query: 301 gtgattgtgtgctaccatgtggttgctgggatttgaacttggggccttcagaagaacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgattgtgtgctaccatgtggttgctgggatttgaacttggggccttcagaagaacagt 560

                                                                       
Query: 361 cagtgctcttacccgctgagccatcttgccagcccgagtattaccatattaaatttctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgctcttacccgctgagccatcttgccagcccgagtattaccatattaaatttctca 620

                    
Query: 421 cccagaagt 429
           |||||||||
Sbjct: 621 cccagaagt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no066_d02.g1 MSMg01no066_d02.g1 CHROMAT_FILE:
MSMg01no066_d02.g1 PHD_FILE: MSMg01no066_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
         (388 letters)



>mm_chr18_10105125_10105912
          Length = 788

 Score =  735 bits (380), Expect = 0.0
 Identities = 383/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcacaaagacccatctgcctctgtcttccaagtgctaggattaaaggcatgtgcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaattcacaaagacccatctgcctctgtcttccaagtgctaggattaaaggcatgtgcc 504

                                                                       
Query: 65  accatctttggctagaattttatattttcatgccagtattgcaattatattacattttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 accatctttggctagaattttatattttcatgccagtattgcaattatattacatttaaa 444

                                                                       
Query: 125 agttttttatgtcatttgataacaatcattttaattctagtttattttatatatgtactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agttttttatgtcatttgataacaatcattttaattctagtttattttatatatgtactt 384

                                                                       
Query: 185 atatgtatgcaatcttatgtatatataaggctcttcataaagtataaacaatgtattcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atatgtatgcaatcttatgtatatataaggctcttcataaagtataaacaatgtattcag 324

                                                                       
Query: 245 tgatataatatatactggaatatctgtcataaaaatacacagcttgggggctggagagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgatataatatatactggaatatctgtcataaaaatacacagcttgggggctggagagat 264

                                                                       
Query: 305 ggctcagctggtaagagcactgactgctctttcaaaggtcctgagttcaaatctcagcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggctcagctggtaagagcactgactgctctttcaaaggtcctgagttcaaatctcagcaa 204

                                   
Query: 365 ccacatggtggctcacaaccaccc 388
           ||||||||||||||||||||||||
Sbjct: 203 ccacatggtggctcacaaccaccc 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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