BAC Information

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BAC

Clone NameMSMg01-066I12
Chromosome18 (Build37)
Map Location 17,190,581 - 17,191,032
singlet/doubletsinglet
Overlap gene1700001G01Rik
Upstream geneLOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
Downstream gene4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066I12.T7 (MSMg01no066_i12.b1)MSMg01-066I12.TJ (MSMg01no066_i12.g1)
ACCAG291482AG291483
length702705
length of high quality
(start - end)
456 (41 - 496)177 (75 - 251)
definitionCHROMAT_FILE: MSMg01no066_i12.b1 PHD_FILE: MSMg01no066_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:21 2005CHROMAT_FILE: MSMg01no066_i12.g1 PHD_FILE: MSMg01no066_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATCTTTCACCCCACTATGTCCATTTGTATTGTCATTATTCATGTTTGGT
TACAGCAACCATATTGCTGAGATACTTGTTTAATTTGCACATATACATAT
TGCAGGCAACAAAAATCTTGCAAGTCATATTAATAACATAAGGGTTCCCT
TACAAAAGAATGTAGTCAGTATTGACTTTAGGTAGTTGTAAAGTTCTCTG
TTCTCCAAGACTACTTTGGAGGGCATCCCTAAGCCCAGAGCTCCTGAGGA
GATAGGCCATTTATTTTCACTACCAGACTATCTCCCCATTTAGTGCATTT
GAGGATGCTCAGTGGCCACTTCACCATTCACTTGCCATCTGTGTTCAGCC
TTATGTTCTGCAGTCAAGTTTTGAGTCCAAGGACACTTCCAAATTAACTT
CCAGAGGCAACAGCTCACCTGGACTAAAACACTTGTACCTGGAGTGATCT
TAAGAATTTAGACCTAACATAGGACTCAGAAACGGTTCATCACAGCCACA
GACTGACAATGAGTTGTAATGAAGACCCTATTGCTGCGGTACGTAGCCCA
TGGAAATCCTTGATACACCATGTGGAACATTAGACTATAACGTATGCATA
ATACATTGGATTTAAAATCCTTTCAAAGGCAAATGCACTAGCTCCCTATT
TT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAGTCACCGTTCCTCATACTTAAC
CAGTTATCAGTCTCTGCATTAATGGCAACTGTTTTAGTTATTGTTCTCTC
ACTGTGAAGAAAACCATGACCAAAGCAAGTCTTGTAAAATAAAGAATTTA
AGCTAAAGACTGGCTTAAAGTTTTAGAGAGTCAGTTCATGATCACTATGA
TAGAAAGCATACAGGTATGGCACTGGAGTAGTAGATGAGAGTTTTACATT
CTGATCCACAAAGAGACAGCCACTGGATATGACATGGCCATTTATTGTCT
AGCTCTGTGACATAACACCCTATAAAGTATTAAACAAAAGTTCGACTCTA
TTAACTTCACTGGGATCCACCAACCAACAGATAGTTAAAAATGCCATCAG
ATAGTACCTAATACCTCTAACGGAGTTATACCTGCCTTGCAATAAACGGT
TGCCACATGCTTTCCCACTAATGTATTTATGTAAATATTTGCATTCTTGA
ACTTGAGTCTTTAACTACAACAATTTTAATAAACCATTTATACTTTGAAA
AATGTTATTCGAATCAATTTGAATCCGCTGTCACTGCTGTACCCTAGATA
CTCATGCCCCCCATAATAAACACTTAAGCCCTTAGATTTTAGAAACTGTA
TTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_i12.b1 MSMg01no066_i12.b1 CHROMAT_FILE:
MSMg01no066_i12.b1 PHD_FILE: MSMg01no066_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:21 2005
         (456 letters)



>mm_chr18_17190377_17191232
          Length = 856

 Score =  820 bits (424), Expect = 0.0
 Identities = 445/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatctttcaccccactatgtccatttgtattgtcattattcatgtttggttaca 64
           |||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccatctttcaattcactatgtccatttgtattgtcattattcatatttggttaca 264

                                                                       
Query: 65  gcaaccatattgctgagatacttgtttaatttgcacatatacatattgcaggcaacaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaaccatattgctgagatacttgtttaatttgcacatatacatattgcaggcaacaaaa 324

                                                                       
Query: 125 atcttgcaagtcatattaataacataagggttcccttacaaaagaatgtagtcagtattg 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttgcaagtcatagtaataacataagggttcccttacaaaagaatgtagtcagtattg 384

                                                                       
Query: 185 actttaggtagttgtaaagttctctgttctccaagactactttggagggcatccctaagc 244
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 385 actttaggtagttgtaaagttctctgttctccaagtctactttggagggcattcctaagc 444

                                                                       
Query: 245 ccagagctcctgaggagataggccatttattttcactaccagactatctccccatttagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagagctcctgaggagataggccatttattttcactaccagactatctccccatttagt 504

                                                                       
Query: 305 gcatttgaggatgctcagtggccacttcaccattcacttgccatctgtgttcagccttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatttgaggatgctcagtggccacttcaccattcacttgccatctgtgttcagccttat 564

                                                                       
Query: 365 gttctgcagtcaagttttgagtccaaggacacttccaaattaacttccagaggcaacagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttctgcagtcaagttttgagtccaaggacacttccaaattaacttccagaggcaacagc 624

                                           
Query: 425 tcacctggactaaaacacttgtacctggagtg 456
           ||||||||||||||||||||||||||||||||
Sbjct: 625 tcacctggactaaaacacttgtacctggagtg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)