BAC Information

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BAC

Clone NameMSMg01-066L11
Chromosome18 (Build37)
Map Location 34,051,905 - 34,052,378
singlet/doubletsinglet
Overlap geneEpb4.1l4a
Upstream geneCamk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L11.T7 (MSMg01no066_l11.b1)MSMg01-066L11.TJ (MSMg01no066_l11.g1)
ACCAG291623AG291624
length716717
length of high quality
(start - end)
374 (68 - 441)458 (70 - 527)
definitionCHROMAT_FILE: MSMg01no066_l11.b1 PHD_FILE: MSMg01no066_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005CHROMAT_FILE: MSMg01no066_l11.g1 PHD_FILE: MSMg01no066_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATTTGCGGCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATTC
TTCTTTATTGTCCTTGATTATTTTAATGAATTATAATTATTAGTCAGCTA
ATTGGTAGTAGGGTCTGAGCCCAGATCCTCATACGTGCTAAGCAAGCACA
CAAGCACTGAGCTGTAGTCCCAGATCTGATTTCGTTTTAATTGTTGTTTT
GAGACAGGATCTCACTTTGTAGCATAGCATGGCTTAGAACTCGCTCTGTA
GCCCGGACTTGCCTTTAACTTGCAGTGATCCTCTTGCTCCATCCTTTGAA
GTATTAAAATTACAGTTGCGATCTCACCATGCCTAGATTGAGACAAGATC
TTGATGTGCAGCTCCAATTAACTTCTAACCTATGATCCCCCTCCTTTAGC
CTCCTAAATACTGAGATCATGAGCACACCAACCCTGACAATGCAAGAGAA
AGACATCGTTCAGCTGAAGATGCTGGAAGGAATCTCACAGGTACCTTACT
GTTGATGAGGTTTGTACAGGCCCTTATCCATTCAACATGCGATTATTGAG
TCTGCTCTCCTCTGATCTAGTGCCAGGTGCTTGGCATTCATCTTAAGATA
TGCTTTGTTTACTACACTGCCCTGATTGTATGGAACTACTGTCTAGTAAG
AGGGCGGCAATTATACTGGGTAACCCATCGTAATGTGAGTCTGGAGAGCT
TCCTGGAGGAGGGAAA
TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGCTCTGCAGAAGGTCTTTCCTTTTTTCC
TGTGAAACAAAAATCGCCAACAGAAGCAAGCCTCAGCTCTCCATCTGCAA
GAGGAGAAAGGAGAAACCACAGCAGCCCCCCAAAAGGCAGAAAGATTCCA
TGGAAGGCACATGGGGGTAAAGAAGTGAATCCTCTCTATCAGTTAGCCTA
GACAAAATGGAGGACCAAACACACACACACACACACATATACACGGTGAG
AGATTCAGGGGCTATAAGAAAATTCTCAGAGAACCTACCAGTGTTTCCTC
CCCTTGCCTTGGGTGAACCATTATTATAAACAGTGGTTCTGATATGTTAT
TCAATCCTCTGACCTTCTACTTCACATTATATATGATAAGCTTTCATACC
GAGTGTCCCAGTTAATCACATCACTGCCACACCAGACTCAATTCTTCTAC
TGCATTTGCCATTGTCTCCCTAGGCAGTGAGATGCTACATTACAAAGACG
TTACAAAGTATCCAAAGACTCAAGCGCACCAACTTAATACAGTGTTCTCT
GGCTGCCTTGCAGACGCGCAGCCAAACCTAGGGTCACCTTTTAAGTATAC
GAGGTGTTTTGCAATCAGGGGGTGTTCTGATGGAATAGGCTGTTTTGGTG
GTGAACCTGGTTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l11.g1 MSMg01no066_l11.g1 CHROMAT_FILE:
MSMg01no066_l11.g1 PHD_FILE: MSMg01no066_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:36 2005
         (458 letters)



>mm_chr18_34051721_34052578
          Length = 858

 Score =  766 bits (396), Expect = 0.0
 Identities = 447/480 (93%), Gaps = 28/480 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggctctgcagaaggtctttccttttttcctgtgaaacaaaaatcgccaacagaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttggctctgcagaaggtctttccttttttcctgtgaaacaaaaatcgccaacagaagcaa 244

                                                                       
Query: 61  gcctcagctctccatctgcaagaggagaaaggagaaaccacagcagccccccaaaaggca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 245 gcctcagctctccatctgcaagaggagaaaggagaaaccacagcagccccc--aaaggca 302

                                                                       
Query: 121 gaaagattccatggaaggcacatgggggtaaagaagtgaatcctctctatcagttagcct 180
           ||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 303 gaaaggttccacggaaggcacatgggg-taaagaagtgaatcctctctatcatttagcct 361

                                                                       
Query: 181 agacaaaatggaggaccaaacacacacacacacacacatatacac--------------- 225
           |||||||||||||||||||||||||||||||||||||| | ||||               
Sbjct: 362 agacaaaatggaggaccaaacacacacacacacacacacacacacacacacacacacaca 421

                                                                       
Query: 226 -------ggtgagagattcaggggctataagaaaattctcagagaacctaccagtgtttc 278
                  |   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cacacacg---agagattcaggggctataagaaaattctcagagaacctaccagtgtttc 478

                                                                       
Query: 279 ctccccttgccttgggtgaaccattattataaacagtggttctgatatgttattcaatcc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctccccttgccttgggtgaaccattattataaacagtggttctgatatgttattcaatcc 538

                                                                       
Query: 339 tctgaccttctacttcacattatatatgataagctttcataccgagtgtcccagttaatc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctgaccttctacttcacattatatatgataagctttcataccgagtgtcccagttaatc 598

                                                                       
Query: 399 acatcactgccacaccagactcaattcttctactgcatttgccattgtctccctaggcag 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acatcactgccacaccagactcaattcttctactgcatttgccattgtctccctaggcag 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)