BAC Information

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BAC

Clone NameMSMg01-067B20
Chromosome18 (Build37)
Map Location 88,946,190 - 88,946,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B20.T7 (MSMg01no067_b20.b1)MSMg01-067B20.TJ (MSMg01no067_b20.g1)
ACCAG291929AG291930
length674679
length of high quality
(start - end)
313 (39 - 351)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no067_b20.b1 PHD_FILE: MSMg01no067_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005CHROMAT_FILE: MSMg01no067_b20.g1 PHD_FILE: MSMg01no067_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTAGCTCTGAGCCCCATTTTTTTAATTAATTTATTTATTTTTATTAC
ATATTTTCCTCAATTACATTTCTAATGTTATCCCAAAAGTTCCCCATACC
CCCCCCCCACTTCCCTACCCACTCATTCCCATTTTTTTGGCCCTGGCGTT
CCCCTGTACTGGGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTC
CAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA
GAGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTG
TATGATTCTATTAGATCCTTGCCCACTTTCTCTAGCTCCTCCATTGGGAA
CCCTATGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC
TAAGCCCCAGTATAGTCTCACAAGAGACAGCTCTATCTGGATCCTTTCAG
CAAAATCTTGCTAGTGTATGCTATGGTGTCAGCGTTTGTAAACTGATTAT
GGGGTGGATCCCTGGATATGGCAGGCTCTACATGGTCCATTCCTTTCGTC
TCAGTTCCAAACTTTGTCTCTGTAACTCTTTTCCTGGATGTTTTGTTCCC
AATTCCAAGGCGGGTGGGCATACT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGTTCTGTGGATTGACTCCTAC
AGCAATCACAAGTGAGAAGAGTGGAAACTTCTTGGGCGGTTGTGCAAAAT
AGAGAATGTCATGGAGACGGAACTGCCTTCGAGACATGCAGGGGAGAGAC
TGTAGAACAGACCCGACAATACTGTGTTTACTAGCTAGACATGGTACAGT
TCCCCAGAGCCCCAGCACTTAGAGAAGATTGCATAGGGAGGTTGTAGCCA
TTGTAAGACAACCATTTTTTCTTTGTGACAGTCAATGATCTTAATGTATT
TCCAAATTTTTTGTGTGTCCCCCCCCCCTGCCACCAGAGAAGCCTGAGAT
CTATGGACTCTAGATTCCACCCACAAAAAAAAATGATCCGGTGGCTGGTG
GGCAGAAACCAGCCTGCCTGCTCAACTCTATTTTAATCTGGAAGTCCCCA
ATCAATTTAGAGTCACAGTGTTCCCAGTGCCAGCATAGTTGTTTCTGTAC
AGCCAGTATAGTTGTAGCAGAATTGGAGGCCCATCATTTTCCCTAATGGT
TCCTGGCTCTGGTAGACACCTTCTTCCCATGGTTGTTTGAGTTATTTCAA
AATGTTCTCGGATCATGGCTTATTGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b20.g1 MSMg01no067_b20.g1 CHROMAT_FILE:
MSMg01no067_b20.g1 PHD_FILE: MSMg01no067_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:08 2005
         (284 letters)



>mm_chr18_88945990_88946673
          Length = 684

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagttctgtggattgactcctacagcaatcacaagtgagaagagtggaaacttcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacagttctgtggattgactcctacagcaatcacaagtgagaagagtggaaacttcttgg 423

                                                                       
Query: 61  gcggttgtgcaaaatagagaatgtcatggagacggaactgccttcgagacatgcagggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcggttgtgcaaaatagagaatgtcatggagacggaactgccttcgagacatgcagggga 363

                                                                       
Query: 121 gagactgtagaacagacccgacaatactgtgtttactagctagacatggtacagttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagactgtagaacagacccgacaatactgtgtttactagctagacatggtacagttcccc 303

                                                                       
Query: 181 agagccccagcacttagagaagattgcatagggaggttgtagccattgtaagacaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agagccccagcacttagagaagattgcatagggaggttgtagccattgtaagacaaccat 243

                                                     
Query: 241 tttttctttgtgacagtcaatgatcttaatgtatttccaaat 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttttctttgtgacagtcaatgatcttaatgtatttccaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)