BAC Information

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BAC

Clone NameMSMg01-067D20
Chromosome18 (Build37)
Map Location 88,946,184 - 88,946,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067D20.T7 (MSMg01no067_d20.b1)MSMg01-067D20.TJ (MSMg01no067_d20.g1)
ACCAG292023AG292024
length591676
length of high quality
(start - end)
145 (40 - 184)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no067_d20.b1 PHD_FILE: MSMg01no067_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:17 2005CHROMAT_FILE: MSMg01no067_d20.g1 PHD_FILE: MSMg01no067_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAATTGGGCGCTXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATCT
TTGTTTAGCTCTGAGCCCCATTTTTTTAATTAATTATTTATTTTTATTAC
ATATTTTCCTCATCACATTTCTAATGTTATCCCAAAAGTTCCCCATACCC
CCCCCCCACTTCCCTACCCACTCATTCCCATTTTTTTGGCCCTGGGGTTC
CCCTGTACTGGGGCATATACGGTTTTGCATGGCCAAAGGGCCCTCCCTTT
CCGGTGAAGGGCCCAATTAAGGGTCCCCCCCTTTTTGGGAATTATAAAAG
GGCCGCCTTTAAGATGCTCTTTTAGAAGATTCTCCTTTTTGTTTAACAGG
GGGGGGATTAATTTTCCCCTCCTAAAAAGGGGGTTTTGTCTCCGTCCCCC
CCTCCTAAAAAGAGTTAGGCTTTTTTCCTTTTTTTTTTAATTTTATAAAA
TATTTTTACTTCTTTTTTGATTGTCGTGTAATACACAAATATTAACCTCT
TCTTTTTCATTCCTCCTTTCTTTTTCCCCCCTCTCCCTTTCAATTTTCAT
TATAAACTTATCACCCCTTCGCCCCCCCCCCTCCCCTCCCT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGTTCTGTGGATTGACTCCTACAG
CAATCACAAGTGAGAAGAGTGCAAACTTCTTGGGCGGTTGTGCAAAATAG
AGAATGTCATGGAGACGGAACTGCCTTCGAGACATGCAGGGGAGAGACTG
TAGAACAGACCCGACAATACTGTGTTTACTAGCTAGACATGGTACAGTTC
CCCAGAGCCCCAGCACTTAGAGAAGATTGCATAGGGAGGTTGTAGCCATT
GTAAGACAACCATTTTTTCTTTGTGACAGTCAATGATCTTAATGTATTTC
CAAATACCCTGTGTGTAATCTTCTCCTGGCACCAGAGAAGCCTGAGATCT
ATGGACTCTAGATTCTACTCACAAAAGATGATGATCCAGTTCTACTAGGC
AGAAACCAGCCTGCCTGCTCAACTCTATTTTAATCTGGAAGTCCACAATC
AATTTAGAGTCACAGTGTTCCCAGTGCCAGCATTTTTGTTTCTGTACAGC
CAGTAAAGTTGTAGCAGAATTGGAGGCCCATCATTTTCCCTAATGGTTCC
TGGCTCTGGTAGACACCTTCTCCACAGTGCTGTATGAGTTATTAAAAATG
TTCTTGGACCATGCAAAATTGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_d20.g1 MSMg01no067_d20.g1 CHROMAT_FILE:
MSMg01no067_d20.g1 PHD_FILE: MSMg01no067_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:17 2005
         (288 letters)



>mm_chr18_88945984_88946671
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagttctgtggattgactcctacagcaatcacaagtgagaagagtgcaaacttcttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 cacagttctgtggattgactcctacagcaatcacaagtgagaagagtggaaacttcttgg 429

                                                                       
Query: 61  gcggttgtgcaaaatagagaatgtcatggagacggaactgccttcgagacatgcagggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcggttgtgcaaaatagagaatgtcatggagacggaactgccttcgagacatgcagggga 369

                                                                       
Query: 121 gagactgtagaacagacccgacaatactgtgtttactagctagacatggtacagttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagactgtagaacagacccgacaatactgtgtttactagctagacatggtacagttcccc 309

                                                                       
Query: 181 agagccccagcacttagagaagattgcatagggaggttgtagccattgtaagacaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagccccagcacttagagaagattgcatagggaggttgtagccattgtaagacaaccat 249

                                                           
Query: 241 tttttctttgtgacagtcaatgatcttaatgtatttccaaataccctg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttttctttgtgacagtcaatgatcttaatgtatttccaaataccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)