BAC Information

Click to search

BAC

Clone NameMSMg01-067G14
Chromosome18 (Build37)
Map Location 78,198,384 - 78,330,309
singlet/doubletdoublet
Overlap gene5430411K18Rik, Cd33l3, Slc14a1
Upstream geneHdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2
Downstream geneSlc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G14.T7 (MSMg01no067_g14.b1)MSMg01-067G14.TJ (MSMg01no067_g14.g1)
ACCAG292152AG292153
length769705
length of high quality
(start - end)
113 (43 - 155)282 (71 - 352)
definitionCHROMAT_FILE: MSMg01no067_g14.b1 PHD_FILE: MSMg01no067_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:30 2005CHROMAT_FILE: MSMg01no067_g14.g1 PHD_FILE: MSMg01no067_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,330,201 - 78,330,309)(78,198,384 - 78,198,665)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACTACTTTCCATGTCCATCAAGGTCTTTTCTACTTAGGCCTTTTCTG
TTATGATGTACCATTTTCCCGTGTCTATTCTTAATTTTATGCTGTTATTG
GAGGTGCGCAGTGCTTGGCTCCTATCCTACCCTTTTCCTCCTTTTTCCCC
TTTCTTCCCCTCCTTCTCCCCCCCCATTTCTCCCCCTTCCTATCTCCCTT
CTCCTTCACATATCCCCCAATCCCCCTCTAACTACCAACATCACCTACCC
CCATCCCCTCAACCCCTACCCCTTTTCTCTTTTTCCCCTTATCACCTTAT
CTCCCCCCTACAATTTCTTTTTTTTCTTCCCCCCCCCCCCCCCCCCCTTC
TCTTCCCCCTTATCTCCACCATACACCCATCCCCCCACCACACAAAAACA
CAAACCCTTCCTTTCCCCCCCCATATTTCTTCCCCCCCTCCCCCCCTCCC
CCACCCCCATTACCCTCACATTCCCCACCCCCACTTCTCCTCCCCATTTT
CCCTTTCCCCCATCACACCCACCCTATTCTTATCCCACCCCACCTTCTCT
TTTTCTTCCCCCCTTCTTTTCCCCCTCCCCCCCCCCTCCCTCTTTTTTAC
TTTCCTCTCCCATTATTCCCCCCCCTTCCCTATTCTTCTCCCCTAAAAAC
AAACCCCCACCCCCCCTCTTCCCCCTCCCCCCTTCTCAAACTCCAACCTC
CCTCTTCTTACCCTTCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGGGAACAGTTTCTTTGCTCATGTGTAT
ATCATCTATCCATATCATGTAAGGCACTTTCTAGTGCAGGCTGATGCCTG
GAATAGATTGGTGGAAGCCATTGGCACACGCCCGTCAGGCCATGTCAGTG
ATGCTGCGTGTGTCATGACCTCTGTAGCTGTCAGCAGGTTTTGAGTCACA
TGAGCTCAATGACATGGCTTCTTAGTGTCTGTGTTGCCAGTGCTTCGCAG
TCGTCAGCATGTGTGATTGCAGCATGTGTGATTACAGCATGTATGATTAC
AGCTTGTGTGATCACAGCACGCGTGATTACAGCATGTGTGATTGCATCAT
GTGTGATTGCACCATGAGCGATTACAGTTTGTATGATTGCAGCATGTGCG
ATTACTGTTATGCGTGATTGCAGTATGTGTGATTGCAGCATGTGTGATTG
CAGCATGTGTGATTACAGTATGTGTGATTACCGTATGCGTGATTGCATTA
TGAGTGATTGCAGAATGCGTGATTGCTTTATGTGTGATTACTGCATGTGT
GATTGCATCTCTGTGTACTGTTACATGTCGTGCTGTCTCATGTTGTTGAT
TACAGTATGTGCTATTCCTCCCCTGTCTCCCCGCTTCCTTGTTTCCCTTC
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g14.b1 MSMg01no067_g14.b1 CHROMAT_FILE:
MSMg01no067_g14.b1 PHD_FILE: MSMg01no067_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:30 2005
         (113 letters)



>mm_chr18_78329997_78330509
          Length = 513

 Score =  165 bits (85), Expect = 1e-45
 Identities = 103/109 (94%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactactttccatgtccatcaaggtcttttctacttaggccttttctgttatga 64
           ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaatttcactactttaaatgtccatcaaggtcttttctacttaggccttttctgttatga 254

                                                            
Query: 65  tgtaccattttcccgtgtctattcttaattttatgctgttattggaggt 113
           |||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 253 tgtagcattttgctgtgtctattcttaattttatgctgttattggaggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_g14.g1 MSMg01no067_g14.g1 CHROMAT_FILE:
MSMg01no067_g14.g1 PHD_FILE: MSMg01no067_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:30 2005
         (282 letters)



>mm_chr18_78198184_78198865
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgggaacagtttctttgctcatgtgtatatcatctatccatatcatgtaaggcacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgggaacagtttctttgctcatgtgtatatcatctatccatatcatgtaaggcacttt 260

                                                                       
Query: 61  ctagtgcaggctgatgcctggaatagattggtggaagccattggcacacgcccgtcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagtgcaggctgatgcctggaatagattggtggaagccattggcacacgcccgtcaggc 320

                                                                       
Query: 121 catgtcagtgatgctgcgtgtgtcatgacctctgtagctgtcagcaggttttgagtcaca 180
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 catgtcagtgatgctgcatgtgtcatgacctctgtggctgtcagcaggttttgagtcaca 380

                                                                       
Query: 181 tgagctcaatgacatggcttcttagtgtctgtgttgccagtgcttcgcagtcgtcagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagctcaatgacatggcttcttagtgtctgtgttgccagtgcttcgcagtcgtcagcat 440

                                                     
Query: 241 gtgtgattgcagcatgtgtgattacagcatgtatgattacag 282
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gtgtgattgcagcatgtgtgattacagcatgtgtgattacag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)