BAC Information

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BAC

Clone NameMSMg01-067N22
Chromosome18 (Build37)
Map Location 76,421,996 - 76,422,178
singlet/doubletsinglet
Overlap geneSmad2
Upstream geneDym, Smad7, Gm672, Zbtb7c, 4833419G08Rik, LOC668184
Downstream geneLOC668188, EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N22.T7 (MSMg01no067_n22.b1)MSMg01-067N22.TJ (MSMg01no067_n22.g1)
ACCAG292501AG292502
length687718
length of high quality
(start - end)
183 (124 - 306)48 (79 - 126)
definitionCHROMAT_FILE: MSMg01no067_n22.b1 PHD_FILE: MSMg01no067_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:06 2005CHROMAT_FILE: MSMg01no067_n22.g1 PHD_FILE: MSMg01no067_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGCCTCACTCATTTTAAATGAGTAAAGACAGCATCGTCATCTGTATAGAA
AAAACTTCTTATACCCGAAGAGTTTGAATTTCTGTTGTGTGCTGTGGTTT
GCATTTGGTAGCATATTGAAATCACTATTTTAAGTTAGCTTTAAAAATTA
ATGTTTCAATGTCTTTTCTAGGGTAGATTTACCGGGCTTTTTCTGAGTGT
GGATTGTTACCTTTGGTAATAAAATGTCGACCATCTTGCCATTCACTCCG
CCAGTGTTGATTAGACTTCTGGGATGGAAAAAATCAGCCGGAGGCTCTTT
TTTATTATGTGCCCCCCCGCCCCCCGGACAGGAAGAAAAGCGTTGTGAAA
AAGCTGTGTTCACCCTGAAAAAAAAGATAATGAAGACGGGACGGGTAGAT
GATCTTGATAAAGCCATCACCACTCATAATTGCAATACTAAGTGAGTCAC
CATATCAAGGTAACGTTGACGGTCTGCTGCGCTGAATTCAGGGAGCCTGC
TAATACTTCATCCGCCCCGACTCATATTGCCCTCTTAACGTAATACATCT
CAGCTCCTCATGTTTTGCGTCTCTTCATACATTTGTTTCCTTCTAGTATC
GCACCCTTAATTACTTACCGCCCATACTTTGTCTCTT
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTCAAGCTTGATCCCTAGG
CACCTCACTGGACTCATCACAGTTCTGGTCCTGCCCTTTAACACCACCAA
GACTGTGACAGAAAGCTCAGCTCCTGATGCCAGACGTTCCTCTACTATGA
AAACCCTAGCCAGACTCCTGGTTTTTCTGAGTGGGAAAGACCTGAAGAGG
TCCTCTGGTCTAGCCCTTTGATATTTGGGGACAAGGCAGAGCAGATCCCA
CTTATTAAGAGTGTGTGTAATTTATCTCGGCGACCACGGAGGAGCGCTGA
CGGGACTTATTTTTTTTTTCGCCCACCACCCCACTTTGTTCTCTAGTACC
CTTGCCCAGTCCAGAAGTTCACCAAACAATAAAAAACAATTGTGTTGTCC
GGGGGAGTGAATAATAAACCAAACAAGTTTTAATTAAAGAACACGTGCTA
CAGCATATCATTATATTAGTTTTTGACTAATAAATCGGTTTATCATGTGT
GTTTGGTGAAAAGCTACCTCAACATGTTGGTCATGCTTACCTTCATGATG
CTGTTCTACTTAATGATGGCGGACTTCCCCATAAATCCTTTGTAATCATA
CCCATACGCTCCATTTTTATTTTTTTTATAAGATTTAAGCTGCACAAGTG
TTGAATTTCTTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n22.b1 MSMg01no067_n22.b1 CHROMAT_FILE:
MSMg01no067_n22.b1 PHD_FILE: MSMg01no067_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:06 2005
         (183 letters)



>mm_chr18_76421796_76422378
          Length = 583

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatttctgttgtgtgctgtggtttgcatttggtagcatattgaaatcactattttaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttgaatttctgttgtgtgctgtggtttgcatttggtagcatattgaaatccctattttaa 260

                                                                       
Query: 61  gttagctttaaaaattaatgtttcaatgtcttttctagggtagatttaccgggctttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagctttaaaaattaatgtttcaatgtcttttctagggtagatttaccgggctttttc 320

                                                                       
Query: 121 tgagtgtggattgttacctttggtaataaaatgtcgaccatcttgccattcactccgcca 180
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 321 tgagtgtggattgttacctttggtaagaaaatgtcgtccatcttgccattcactccgcca 380

              
Query: 181 gtg 183
           |||
Sbjct: 381 gtg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)