Query= MSMg01no068_p03.b1 MSMg01no068_p03.b1 CHROMAT_FILE:
MSMg01no068_p03.b1 PHD_FILE: MSMg01no068_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
(462 letters)
>mm_chr18_39222477_39223339
Length = 863
Score = 646 bits (334), Expect = 0.0
Identities = 420/462 (90%), Gaps = 24/462 (5%)
Strand = Plus / Plus
Query: 4 gaattcattaaaaa---atatcatttgaaacaggttatttggcggacagtttggtaatgt 60
|||||||||||||| | | |||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattcattaaaaacaaaaa--atttgaaacaggttatttgggggacagtttggtaatgt 261
Query: 61 cagagtttgtcattgtttgaaattgcctcaggtcattctctatgattttccactgctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagagtttgtcattgtttgaaattgcctcaggtcattctctatgattttccactgctatc 321
Query: 121 aagaccttatccacacagtaaaaacactgcttttttgtttgtttgtttgtttctttggtt 180
||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 322 aagaccttatccacacagtaaaaacactgtttttttgtttg----------------gtt 365
Query: 181 ggtttttttttttttttgtagatcagcatatggggttgtgaaataaagtaaagtagctac 240
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 366 g---tttttttttttttgtagatcagcatatggggttgtgaaataaaataaagtaactac 422
Query: 241 cagggtccctacttccatgtagacacacacacacaaaccaatatggctaatctgtaagtc 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 423 cagggtccctacttccatgtagacacacacacaaaaaccaatatggctaatctgtaagtt 482
Query: 301 ctaaaatggccaggaaagaaattctgggtaacaggattaatttacttatgtatttattaa 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 483 ctaaaatggccaggaaagaaattctgggtaacaggattaatttacgtatgtatttattca 542
Query: 361 tgcgcgtgccctggctcgccagctcgaacaacgccacaaaaggatccttctgcacacgtt 420
|| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 543 tgtgcgtgccctggcttgccagcaagaatgacgccacaaaaggatccttctgcacacgtt 602
Query: 421 tattggtagagcttgattacttaggcgaaagaccctgagccc 462
|||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 603 tattgggagggcttgattacttaggcgaaagaccccgagccc 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_p03.g1 MSMg01no068_p03.g1 CHROMAT_FILE:
MSMg01no068_p03.g1 PHD_FILE: MSMg01no068_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
(473 letters)
>mm_chr18_39373194_39374066
Length = 873
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Minus
Query: 1 ttccattggctcagttaaaatctagatacactgaactccgtttctgtaagtgatggccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttccattggctcagttaaaatctagatacactgaactccgtttctgtaagtgatggccat 614
Query: 61 tcgcattcacttaccatcagccccctctgccaaatcccatgccattctaaacagactggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcgcattcacttaccatcagccccctctgccaaatcccatgccattctaaacagactggt 554
Query: 121 tttttaaaagtcccctgtgtgttaagtgacgagctaacaaactatcctccatggctaaaa 180
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 553 ttttaaaaagttccctgtgtgttaagtgacgagctaaccaactatcctccatggctaaaa 494
Query: 181 gtcaccactgcctgatctacagataaagctttactggccagtactcctccattcaccccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtcaccactgcctgatctacagataaagctttactggccagtactcctccattcaccccc 434
Query: 241 atagcatcagtggctgctctcacactagggccatagaggaaatcaacaattccgcaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atagcatcagtggctgctctcacactagggccatagaggaaatcaacaattccgcaaact 374
Query: 301 aaaagtatttcccctctgcccctttactgaaaagcaagatctctgtggtaaatgatggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaagtatttcccctctgcccctttactgaaaagcaagatctctgtggtaaatgatggca 314
Query: 361 tttacaaaatcaacaaatttatggtgtttgtgcctcccactcataccacactaagtacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttacaaaatcaacaaatttatggtgtttgtgcctcccactcataccacactaagtacat 254
Query: 421 atcagaaacagctacttagaacgctccagaggtactagcgttgagacatgcag 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcagaaacagctacttagaacgctccagaggtactagcgttgagacatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
