BAC Information

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BAC

Clone NameMSMg01-069L12
Chromosome18 (Build37)
Map Location 26,710,777 - 26,710,896
singlet/doubletsinglet
Overlap genenone
Upstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L12.T7 (MSMg01no069_l12.b1)MSMg01-069L12.TJ (MSMg01no069_l12.g1)
ACCAG293910AG293911
length764791
length of high quality
(start - end)
120 (161 - 280)46 (355 - 400)
definitionCHROMAT_FILE: MSMg01no069_l12.b1 PHD_FILE: MSMg01no069_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:33 2005CHROMAT_FILE: MSMg01no069_l12.g1 PHD_FILE: MSMg01no069_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTCCCCCTCCCTCTTTTCCCTCTCCTCTCTTTTTCCTCTCACCCCCT
TTTCTCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTGTTTCCTTAGATACCTAAACATGAAGTAGATAT
TTAGAGGCTTTTCAATGATTTTTACTCTGATAAGTTGTTGATTACAATGT
CGACTTCCTCATATACTCAATAGCTCAATTCCATACCTGAAGGCTGTACC
TTTCTCTCACTTTCCTTTTATATTTTCCAATACAATATTCATTCCTTGAA
CAATATTCTTGAAACATTAATTAATATTTTATTTCCAATCAGTAAGGACT
GACACAAATTTGCCTTTATCATGAAATTATGTTACCATTCATTAAGGACA
GCTCTTGAGTATAACAATCCAAGTCCCTTTTTAAAAATCACTCTTGATCT
ATTTAATTTGTATTCTGGCAATGTCCCCTCTTTCTTACTGCCTGTTTCCT
CTTTCCAACTGCCTTCTATATATCCATGTTTACATTTGAATTATTGGATA
GCTCTTCATCCTTAATCCAGCCCATTATACTTCTATATCAGTTAGCTCTT
GAATTTGATAGTCTGCTCCTGTTCTCGCTTTTTTACTATCCACCAGATTC
CCGACCTATACATTTTCATTTTCATTCCCTTCTACTGTTTTTTGCCCTCT
GCTTTTTTTTTTTTTTTCTCTTTCCCTCCTTTCCCTTTTGTATTTTACCT
ATTACCCCTCTCCC
TTTTTATTTTTCTTTATTTTTTNTTTCTTTTTTTCCCCTCTNTCCCCCCT
CTCCTGCNTTCTTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCACGACGAAATTCGTCTGAGAA
ATAGGGTAAGCAGGGTGTGAAAGAGGCCAGATCTGCACCCGGACTATGCA
AGTCCCGCTTACAGAGTTGATGATAGCATAGAAAAATAAAGAAATGATTA
TCATGTATAAATGGGATTGGAACCAAGAAGAACAGATTCTGAGGAGATAC
TGACTGGTCTCAATTGCTTTGAGCACCCTTACTCTGAAAAAGAATGCTTG
TTCACTCTCATTCGTTCTTTTCTTTATAATTTTTTTCTTTTATGAAATCC
GCGTCTCTTGTAATGTGAAATAGTTTTTTTTAAATCCAGCCCGCCCATTT
CAATTGTGCTTTCTTATTGAGTATTATAATCCGATGCCTAACGGATTCCG
GCTGCATTGGTATATATTTATTCCCATAATATCATTTTCTTCTGTATGTT
TGCTGTCACATCCTTATTGATTTTATGCATTGTCCCGATGGCGTGTTGAT
GCTTCATTGATCGCTTGTTTTTTTAACTTACTCACTTTGTAAACCCTATT
GTTTTCCCGACTTTTATGGCTTCATTCCCGCTTGTTTGTCAGTCATGTAC
TTAATTGTACATTAAACTGCCATCTTTATTTTTTTTCTATGGCTATGTAC
TCTTCCTCGCCCATTTTTATTTTTCATTTGTTCACGCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l12.b1 MSMg01no069_l12.b1 CHROMAT_FILE:
MSMg01no069_l12.b1 PHD_FILE: MSMg01no069_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:33 2005
         (120 letters)



>mm_chr18_26710577_26711096
          Length = 520

 Score =  194 bits (100), Expect = 2e-54
 Identities = 115/120 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaatgatttttactctgataagttgttgattacaatgtcgacttcctcatatactcaa 60
           |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||
Sbjct: 201 ttcaatgatttttactctgagaagttgttgattacaatgttgacttcctcacatagtcaa 260

                                                                       
Query: 61  tagctcaattccatacctgaaggctgtacctttctctcactttccttttatattttccaa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctaaattccatacctgaaggctgtacctttctctcactttccttttatattttccaa 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)