BAC Information

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BAC

Clone NameMSMg01-069P11
Chromosome18 (Build37)18 (Build37)
Map Location 85,964,600 - 85,964,76486,201,876 - 86,202,265
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P11.T7 (MSMg01no069_p11.b1)MSMg01-069P11.TJ (MSMg01no069_p11.g1)
ACCAG294099AG294100
length703699
length of high quality
(start - end)
414 (71 - 484)391 (72 - 462)
definitionCHROMAT_FILE: MSMg01no069_p11.b1 PHD_FILE: MSMg01no069_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:52 2005CHROMAT_FILE: MSMg01no069_p11.g1 PHD_FILE: MSMg01no069_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:52 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,964,600 - 85,964,764)(86,201,876 - 86,202,265)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCATTCACTGATAATACATTTACTATGTAAAATAACATATGAG
GAGAAGGTAAAACAGAAACCCACTTGTAGAGTTACATAACAATTTTCGGG
TTCCATTCTGTATTATGTGCTGTTTCCGGATATTTATATATTTATTCATT
TATTTACTTGTTTATTTATCGTGCATATATTTTGTGTATGTGTGTCTATG
GGTACACATGTGTGACACATGTGAACATAGCAATATGACATCTCATAGTC
TTTTCTTCCCTCTTTCTTCCTCATGGGTCCCAAGAATGGATCATAGGAGG
CTTGGAGGTGTGCACAATTTCAACAACTGTGATGAACAATCTCAGGAGCC
TTATTGACACTTAAGTACTTCAAGCAAAGGGCCTGGGTTATCAGAAGTGT
ATTTTAACAAGTTTGTGTTGAGTGCGGTAAGAATGGTAAGAGATAAAAAG
TGAAAAGACTAGTGAAGACTTTGTATTCCACTCAAGGTCGATGCCACCAG
ACTATATTGATGTACCACCCTCCCTCAGTCTCATTCATTTCTGTGCCTCT
TTCATTCCCCCAAGGATCAAATGCCTTGTTAGCCATCAAGTTTTCCCGTA
CTTCCATGTACCCTTCGTTATGTTCCTGCATCCTGTTACCTTGCAAACAT
TTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATAAATTCCCTTTACAACATTCTCCA
TTGCATTTTGAAAATCCAGCCAGAGAGAGGCACATTAAGGTATGCCACAG
AAGAAATTAACTTCAGTTCTGTCTAGCTATTTAAAAGAGCAAGGGCTAGA
AAGAACATTTTAGAAAGGAGATATGGGAAACACGAAAGTAGAAATGGAAC
CAGTTATGGAGGAAGCCAGGAAGCAGGTGGGCAAAAGTGAGAATTGGGAT
GTACATGTGTAAACCATGAAGTCATGCAGCCATCCAGATGTCTTATTAGA
TTAGGGTCATGACTTGAAATTGATCCCTGTAACACTTATGGTGGAAGGAG
AGAACCAACTCCTATAGTTTGTTCTCTGATCTCTATATGTTCCTGTGGTA
CACACACACACACACAAGCACACACTCACACACACACTCTTACATACCTT
CACACTCACACACACACACACTTAAATTTAGATGACTTTGCATTCATAAG
TAGATGAAAACTGATATTTTTCTTACTCCTAAGGAAATAATAAATCTCTT
ACGCTATTTTGTCCATTATTTTCTGGTACCCTGAGAAAGCCAGACACAGA
ATGGTGTCTAATATAACTGGATGCATCAGACTCTTGAACATTATACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p11.b1 MSMg01no069_p11.b1 CHROMAT_FILE:
MSMg01no069_p11.b1 PHD_FILE: MSMg01no069_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:52 2005
         (414 letters)



>mm_chr18_85964455_85965268
          Length = 814

 Score =  304 bits (157), Expect = 8e-87
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacatttactatgtaaaataacatatgaggagaaggtaaaacagaaacccacttgtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 310 atacatttactatgtaaaataacatatgaggagaaggtaaaacagaaaccaagttgtaga 251

                                                                       
Query: 61  gttacataacaattttcgggttccattctgtattatgtgctgtttccggatatttatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttacataacaattttcgggttccattctgtattatgtgctgtttccggatatttatata 191

                                                        
Query: 121 tttattcatttatttacttgtttatttatcgtgcatatattttgt 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttattcatttatttacttgtttatttatcgtgcatatattttgt 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no069_p11.g1 MSMg01no069_p11.g1 CHROMAT_FILE:
MSMg01no069_p11.g1 PHD_FILE: MSMg01no069_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:52 2005
         (391 letters)



>mm_chr18_86201779_86202569
          Length = 791

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaataaattccctttacaacattctccattgcattttgaaaatccagccagagagaggca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaataaattccctttacaacattctccattgcattttgaaaatccagccagagagaggca 428

                                                                       
Query: 62  cattaaggtatgccacagaagaaattaacttcagttctgtctagctatttaaaagagcaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cattaaggtatgccacagaagaaattaacttcagttctgtctagctatttaaaagagcaa 368

                                                                       
Query: 122 gggctagaaagaacattttagaaaggagatatgggaaacacgaaagtagaaatggaacca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggctagaaagaacattttagaaaggagatatgggaaacacgaaagtagaaatggaacca 308

                                                                       
Query: 182 gttatggaggaagccaggaagcaggtgggcaaaagtgagaattgggatgtacatgtgtaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gttatggaggaagccaggaagcaggtgggcaaaagtgagaattgggatgtacatgtgtaa 248

                                                                       
Query: 242 accatgaagtcatgcagccatccagatgtcttattagattagggtcatgacttgaaattg 301
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 247 accatgaagtcatacagccatccagatgtcttatcagattagggtcatgacttgaaattg 188

                                                                       
Query: 302 atccctgtaacacttatggtggaaggagagaaccaactcctatagtttgttctctgatct 361
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atccctgtaacactcatggtggaaggagagaaccaactcctatagtttgttctctgatct 128

                                         
Query: 362 ctatatgttcctgtggtacacacacacaca 391
           |||||||||| |||||||||||||||||||
Sbjct: 127 ctatatgttcttgtggtacacacacacaca 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)