BAC Information

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BAC

Clone NameMSMg01-070E22
Chromosome18 (Build37)
Map Location 6,781,577 - 6,782,127
singlet/doubletsinglet
Overlap geneRab18
Upstream geneArhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053
Downstream geneLOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E22.T7 (MSMg01no070_e22.b1)MSMg01-070E22.TJ (MSMg01no070_e22.g1)
ACCAG294360AG294361
length668746
length of high quality
(start - end)
606 (63 - 668)300 (139 - 438)
definitionCHROMAT_FILE: MSMg01no070_e22.b1 PHD_FILE: MSMg01no070_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:19 2005CHROMAT_FILE: MSMg01no070_e22.g1 PHD_FILE: MSMg01no070_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAATACGACTCCTATAGGTACAGAATCCGCGGAATTCTCAGAA
TTTTTCCTTCCAGGTTTTTGTTTTGTTTTTTCTTTATTGTTGTTTTAATC
TTTGTTTTGAACCAGAGGGAACAGAAAAAAAAGCTGTTGATAGCAAAACT
GTTTCACAACTGAAAAAGTTTTATAACGATCAGTTGTGAATCAGAAATTT
TAAATAATTTAACTTCTAGACTTAGCACAGGACAATCTAGTATGAACTCT
TGAGAACAACTTAAAAAACCGCCTTTGGATAATCCCGAAATCCGATGGAA
ATAGAAAACAGATGCTATTCCTGATCTACAAGCATGCTGTGTGCCCTCAC
TCATTCAGATAGACACACCACACACACACACACACACACACACACACACA
CACATACACACACACACACACACACACATACACACATGCACGCATGCAAT
GTAATTTTGACTAATTTTTTGTGAAAATTTAACAAGGACCAGATGTTAAA
ATTTTGGTATTTTTAAATTCACCTATACAAATGTCTTGGTATGATAATTT
TGGGTGTAAACTTCAAAATCTTGCACCAAAACATTAGACTAGTTTATAAT
AACTATGTACTAAATTATAGTAAACTGTGAAAGTTTAACAGACATTAAAC
TTTGGCTTGTATTTGTCG
GACGATGACATCAGTCGGCCCTGTATCTAACCGCGAAATAGGGGGTGAGT
NNCCCNNNNCNTTTTCTATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATCTACTT
GGACTTCAATTTTGGGTGTATTTTCATTCCTCTACCCGCAGATATCCATT
TAGAAAGGCACTATTTTTGACGATCTTTTTTTCCATTGTATGTTTTTGAC
TTCTTTGTCAAAAATCAAAAGTCTGTAAGTGTTTGGGTTTATTTCTTTGT
CTTGATTCTATTCCACTGATCAACCTGTCTGTTTTTATGTCCATACCACA
CAGTTTTTATTACTCTTGTTCTGTAGTACAGCTTAAGGTCAGGGATGGTG
ATACCTGTAGGCATTTCTTTTATAGTTCAGGATCCTTTCTCTCCTGCTAT
ACCAGGTTTTTGTTTTGTTTCATCTTTCTATATGAAGTTGAGAATTGTTG
TCTCACGATATATAATTTATTGTGTTGCACTTTTCATGGGGATTGTATTG
AATCTGTAGATTGTCCTTGGTAAGATTGCCAATTTTATGTATGTTAATAC
TGCCAAACTATGAGCGCAAGACATCTTTCAGTGTTCTGATTACTTCCTTA
GATCCTCTCTTTAGAAGCTTGAAGTTCTTGCCCTCGCGTCGCCAAGATAT
CCCATATTAATTTGTGGGTATTGTTAACTGCGGTGCTTCCCCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e22.b1 MSMg01no070_e22.b1 CHROMAT_FILE:
MSMg01no070_e22.b1 PHD_FILE: MSMg01no070_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:19 2005
         (606 letters)



>mm_chr18_6781577_6782582
          Length = 1006

 Score =  992 bits (513), Expect = 0.0
 Identities = 546/567 (96%), Gaps = 17/567 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtttttgttttgttttttctttattgttgttttaatctttgttttgaaccagagggaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 551 ggtttttgttttgttttttctttattgttgttttaatctttgttttgaaagagagggaac 492

                                                                       
Query: 61  agaaaaaaaagctgttgatagcaaaactgtttcacaactgaaaaagttttataacgatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agaaaaaaaagctgttgatagcaaaactgtttcacaactgaaaaagttttataacgatca 432

                                                                       
Query: 121 gttgtgaatcagaaattttaaataatttaacttctagacttagcacaggacaatctagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttgtgaatcagaaattttaaataatttaacttctagacttagcacaggacaatctagta 372

                                                                       
Query: 181 tgaactcttgagaacaacttaaaaaaccgcctttggataatcccgaaatccgatggaaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 tgaactcttgagaacaacttaaaaaaccgcctttggataatcccgaaatccgatggtaat 312

                                                                       
Query: 241 agaaaacagatgctattcctgatctacaagcatgctgtgtgccctcactcattcagatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaaaacagatgctattcctgatctacaagcatgctgtgtgccctcactcattcagatag 252

                                                                       
Query: 301 acacaccacacacacacacacacacacacacacacacacacatacacacacacacacaca 360
           ||||||||||||||||||||||||||||||||||||||||||                ||
Sbjct: 251 acacaccacacacacacacacacacacacacacacacacaca----------------ca 208

                                                                       
Query: 361 cacacatacacacatgcacgcatgcaatgtaattttgactaattttttgtgaaaatttaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 cacacatacacacatgcacgcatgcaatgtaattttgactaactttttgtgaaaatttaa 148

                                                                       
Query: 421 caaggaccagatgttaaaattttggtatttttaaattcacctatacaaatgtcttggtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 caaggaccagatgttaaaattttggtatttttaaattcacctatacaaatgtcttggtat 88

                                                                       
Query: 481 gataattttgggtgtaaacttcaaaatcttgcaccaaaacattagactag-tttataata 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 87  gataattttgggtgtaaacttcaaaatcttgcaccaaaacattagactagatttataata 28

                                      
Query: 540 actatgtactaaattatagtaaactgt 566
           |||||||||||||||||||||||||||
Sbjct: 27  actatgtactaaattatagtaaactgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)