Query= MSMg01no070_l02.b1 MSMg01no070_l02.b1 CHROMAT_FILE:
MSMg01no070_l02.b1 PHD_FILE: MSMg01no070_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:51 2005
(493 letters)
>mm_chr18_44716677_44717562
Length = 886
Score = 843 bits (436), Expect = 0.0
Identities = 474/490 (96%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 4 ggaattccattagagacggctttgtgctgtggggaacaaggaaaggaaaacagaatgcag 63
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaattccaatagagatggctttgtgctgtggggaacaaggaaaggaaaacagaatgcag 627
Query: 64 caattaaggaggagagatctagaagggttttattgttcgcggatagaagtggcatgggag 123
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 626 caattaaggaggagatatctagaagggttttactgttcgcggatagaagtggcatgggag 567
Query: 124 aatatggaggatagcaccacagtatagaagacagactgcgtgacactacttaccagagcg 183
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aatacggaggttagcaccacagtatagaagacagactgcgtgacactacttaccagagcg 507
Query: 184 ccagatcaaattttaattacgagatgcctagagaggaaggaagccagatgttggcagagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccagatcaaattttaattacgagatgcctagagaggaaggaagccagatgttggcagagg 447
Query: 244 tttagccatccctgcaaagaacagacttgggagcaaagagaaaatactcatttagccaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttagccatccctgcaaagaacagacttgggagcaaagagaaaatactcatttagccaac 387
Query: 304 agttatggcagagcggtttgtgacattgtttctttcagatctccttcctgcagagaccct 363
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 agttatggcagagtggtttgtgacattgtttctttcagatgtccttcctgcagagaccct 327
Query: 364 catgggtaagttgtctgtcctggggcctcccctctccatgcttgcagtcatcttctggtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catgggtaagttgtctgtcctggggcctcccctctccatgcttgcagtcatcttctggtt 267
Query: 424 tctaaaatctccattgcccgccccccacccccaccccaccatgactttggtgtttgaatt 483
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 266 tctaaaatctccattgcccgcccccc-ccccc------ccatgactttggtgtttgaatt 214
Query: 484 ggacacttaa 493
||||| ||||
Sbjct: 213 ggacatttaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 886
Length adjustment: 10
Effective length of query: 483
Effective length of database: 876
Effective search space: 423108
Effective search space used: 423108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_l02.g1 MSMg01no070_l02.g1 CHROMAT_FILE:
MSMg01no070_l02.g1 PHD_FILE: MSMg01no070_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:51 2005
(516 letters)
>mm_chr18_44651995_44652910
Length = 916
Score = 951 bits (492), Expect = 0.0
Identities = 510/516 (98%)
Strand = Plus / Plus
Query: 1 ttcccgacagaccagactgtgcctttgcataagttcctataagacctggaagtataaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttcccgacagaccagactgtgcctttgcataagttcctataagacctggaagtataagtt 260
Query: 61 gcaaggtccagggcactaagccacagtgaagcaatagaaatacacccgaggccaggatca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gcaaggtccagggcactaagccacagtgaagcaatagaaatacacccaaggccaggatca 320
Query: 121 agaaggacttgacgtccctattattcggaaagaggcgagggtgggcacatgccattcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggacttgacgtccctattattcggaaagaggcgagggtgggcacatgccattcctc 380
Query: 181 tcactccatattttctcagaagtaaaagaaaaaaggtgtggctgagacccagatatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactccatattttctcagaagtaaaagaaaaaaggtgtggctgagacccagatatactg 440
Query: 241 gctagggatggggtgactcagctagacccctatccattccttctttggacagcacagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagggatggggtgactcagctagacccctatccattccttctttggacagcacagact 500
Query: 301 gctggctcataaagtttgattctagaaatcttaactctgtaagaaagcctctaaggtcaa 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggctcataaagttggattctagaaatcttaactctgtaagaaagcctctaaggtcaa 560
Query: 361 cttgcaacataagaatacgatggtggctggccacagagacatacatctttaatccggcac 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcaacataagaatacgatgatggctggccacagagacatacatctttaatccggcac 620
Query: 421 ttgggaggcagaggcagatggatttctatgaatccgaggtcatttttgtctacagttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ttgggaggcagaggcagatggatttctatgaatccgaggtcatttttgtttacagttcca 680
Query: 481 ggccagctagggctacttgttgaaatctaatctcaa 516
|||||||||||||||| |||||||||||||||||||
Sbjct: 681 ggccagctagggctacatgttgaaatctaatctcaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
