BAC Information

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BAC

Clone NameMSMg01-072B09
Chromosome18 (Build37)
Map Location 72,184,491 - 72,184,778
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072B09.T7 (MSMg01no072_b09.b1)MSMg01-072B09.TJ (MSMg01no072_b09.g1)
ACCAG295715AG295716
length688701
length of high quality
(start - end)
476 (36 - 511)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no072_b09.b1 PHD_FILE: MSMg01no072_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:42 2005CHROMAT_FILE: MSMg01no072_b09.g1 PHD_FILE: MSMg01no072_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCTCACC
TGAGTGATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAACACCCAGAATCTGGAAAGAACCTATATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACC
TGGAGGGCATCACCCTGATTGAGGTAACACATTCACAAAGAAACTCACAC
AATATGTATTCTCTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCA
AGATATAAGATATAATTTGCTAAACACATGATTCTCAG
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGTCATAGTAATTGACCAATTTCT
CACCTAGGCAGTATCACTAAAGATAATTCTCTAATACTAAATTTATTTAG
CCCCATAATTATGGGAAAGCACGTGTACACACCTTTCAAAAGGAAGATGT
GAAGAGTCAACTAACTGCTCCGAGGCCCATCTATGATTCGTTCCTAAGGC
TTATATAATTGAAGGATTCTCACTGACCATGCAGCAATAAAACTCTCAGT
GGCAGATGGGATTGATGTCAGGTTACATCGTCATGGTTGAATCCTGGAGT
GTCGATTACTGCCATTGTTGCCTGTTGTTATTTTGATGATGCTGGTAAAT
CCATTTCACATCTGGCCACAGCTTTAATAAATGAGTGTGATCTCTCCAGT
TACAAGTGGGGCTTGCAAGGAGAGTGGGAGGAGTATGTGCCTAAGAACCA
TTTTTGAATCCCAATATCCATCTAACACCCAAAGTATAGCCACACTCATG
CCTAACAGCCATACATTGATGGTTTGTGTTATACCGGACGACCGCGTGTG
CTTAATATCTGCCAAACTTATCCTACATTCATTTGAGCTACCTTCCTCTA
GGTAATATGATATATAGACGACGTGTCCGCTTGATTACATACTATCCCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_b09.g1 MSMg01no072_b09.g1 CHROMAT_FILE:
MSMg01no072_b09.g1 PHD_FILE: MSMg01no072_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:42 2005
         (289 letters)



>mm_chr18_72184291_72184979
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagtcatagtaattgaccaatttctcacctaggcagtatcactaaagataattctcta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 488 tttagtcatagtaattgaccaatttctcacctaggcagtatcattaaagataattctcta 429

                                                                       
Query: 61  atactaaatttatttagccccataattatgggaaagcacgtgtacacacctttcaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atactaaatttatttagccccataattatgggaaagcacgtgtacacacctttcaaaagg 369

                                                                       
Query: 121 aagatgtgaagagtcaactaactgctccgaggcccatctatgattcgttcctaaggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagatgtgaagagtcaactaactgctccgaggcccatctatgattcgttcctaaggctta 309

                                                                       
Query: 181 tataattgaaggattctcactgaccatgcagcaataaaactctcagtggcagatgggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tataattgaaggattctcactgaccatgcagcaataaaactctcagtggcagatgggatt 249

                                                           
Query: 241 gatgtcaggttacatcgtcatggttgaatcctggagtgtcgattactg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gatgtcaggttacatcgtcatggttgaatcctggagtgtcgattactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)