BAC Information

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BAC

Clone NameMSMg01-072E17
Chromosome18 (Build37)
Map Location 35,026,453 - 35,026,798
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1
Downstream geneEtf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072E17.T7 (MSMg01no072_e17.b1)MSMg01-072E17.TJ (MSMg01no072_e17.g1)
ACCAG295872AG295873
length698701
length of high quality
(start - end)
349 (63 - 411)441 (71 - 511)
definitionCHROMAT_FILE: MSMg01no072_e17.b1 PHD_FILE: MSMg01no072_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:59 2005CHROMAT_FILE: MSMg01no072_e17.g1 PHD_FILE: MSMg01no072_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTC
CTAGAGGTCCCGCATGTTCTACCTCAGATCTACATCTGTTTCTCCCCCTT
TCTCATTTCTTCCATGCTATATGGTCTTGGTCTTTTTCATATTTCTGAGA
TGCTAAACAATGTCCCCGGGTAGCAATCACTAGTTCAGCACTCTTTCCAA
ATGTCAGTTTTTACTATGGTCACAGCTTTTATCAGCACTGTTCTGAGCCT
TTGGTTGCAGCTATCCCTCTTAGGAGCAAGAGATGAAATTATATGCTGTT
GTCATTTTGGTTGCTTCTTCTGGAACCCAGGTTTTGTGCATGTTCTGAAA
GAGCCCTGTTGGAGAGCTACACCCTCAGACCCTGGCAACACACCTATATT
CTTGGTCTATAACACAGGGCAATTTTTTGAGTGGTGCCCTATTTCAATCA
TGCAAAAGAACTTGAGTTTGGAGTGTTAGAATCTAATATAAACCTTGGTG
CCAAGACTGTCAAATATTGGCTAGCAATCTTGGCAGAATTTCTCAGCCAG
CCATCTGACTAGGAATGACCTTGTTATCATGGCCAGTACTTCATGCCTCC
CGGATGCTAGGCAGCAATGTTGTTCTTTGGGAAACTTGGCCAGTTATTTT
CACCCTAGGTCCCTCAAACTCTATTGTAATAAACTTGCCTTTGCTTTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAGATCTGTCTGCCTTTGTTAAGCACAGA
AATGACCGTTTCTACCAAGCCTAGGCCTAGCCTTGCTCTGTCCAGGCCAA
CCCTGAACCCAGGAATCTGCCTGCCCTTGTAAGCATTAACAACAAACTTA
GTTGGGTGGAATCTCCTGCGGATCCCTAAATCTCTTTCTCTCCTTAATCT
CTTTCTGACATGTTGGTTCACAGGGGAGCTCTCCAGAGAAAGAACACAGG
GAAAGAAGTCTGGAAAGCTGTCTCCAGCAGAACATAGTCAGCTTGACCCC
ACGACTTGACTTATAGCCCTTTGTTTTCACGGCTCGCAGACCCCCCTTGA
CTCATAACCCCCCTCCAAGCCGAGGCTGGTCCTTGACAGGTGGGGTAGGT
AAGCATATTGGGCTAGGTTGGAAGGATTTCACTTAGGGGTGTCATAACAC
CCCTCCCCCGTGTAAGACAGAGCTGGCCAAAGTAATGAAGGTTTGGTAAA
TAAAAATCAAATTCAAAAAGCAGAGAAATATAGATGTCAAGATTTTAATA
TATTCATTTACTAACAAAGATGTCTAGACATAAACCAGGCCTTTTTTTTT
TTTTCCTAGCATTTCTTTTGATCTCAAGGCTCAAAGTTAATTCATTGTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_e17.b1 MSMg01no072_e17.b1 CHROMAT_FILE:
MSMg01no072_e17.b1 PHD_FILE: MSMg01no072_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:59 2005
         (349 letters)



>mm_chr18_35026253_35026998
          Length = 746

 Score =  640 bits (331), Expect = 0.0
 Identities = 344/349 (98%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttctacctcagatctacatctgtttctccccctttctcatttcttccatgctatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 546 catgttctacctcagatctacatctgtttctccccctttctcatttcttccatgc--tat 489

                                                                       
Query: 61  ggtcttggtctttttcatatttctgagatgctaaacaatgtccccgggtagcaatcacta 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggtcttggtctttttcatatttccgagatgctaaacaatgtccccgggtagcaatcacta 429

                                                                       
Query: 121 gttcagcactctttccaaatgtcagtttttactatggtcacagcttttatcagcactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttcagcactctttccaaatgtcagtttttactatggtcacagcttttatcagcactgtt 369

                                                                       
Query: 181 ctgagcctttggttgcagctatccctcttaggagcaagagatgaaattatatgctgttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 368 ctgagcctttggttgcagctatccctcttaggagcaagagatgaaatta-atgctgttgt 310

                                                                       
Query: 241 cattttggttgcttcttctggaacccaggttttgtgcatgttctgaaagagccctgttgg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 309 cattttggttgcttcttctggaacccaggctttgtgcatgttctgaaagagccctgttgg 250

                                                            
Query: 301 agagctacaccctcagaccctggcaacacacctatattcttggtctata 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agagctacaccctcagaccctggcaacacacctatattcttggtctata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 746
Length adjustment: 9
Effective length of query: 340
Effective length of database: 737
Effective search space:   250580
Effective search space used:   250580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)