BAC Information

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BAC

Clone NameMSMg01-072F14
Chromosome18 (Build37)
Map Location 87,223,657 - 87,224,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F14.T7 (MSMg01no072_f14.b1)MSMg01-072F14.TJ (MSMg01no072_f14.g1)
ACCAG295914AG295915
length723726
length of high quality
(start - end)
580 (44 - 623)535 (72 - 606)
definitionCHROMAT_FILE: MSMg01no072_f14.b1 PHD_FILE: MSMg01no072_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:03 2005CHROMAT_FILE: MSMg01no072_f14.g1 PHD_FILE: MSMg01no072_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTATTCTTACAAGATTAAAGGAAGAGAAACTGAGAGCCACTGGCC
TAGCTTGAGTATCTGAGTCCTCAATGCTGACCCCCAGTGTTAAACTTCCT
CCAACAAAGATATACCCACTCCAATTAGGCCACATCTCCTAATAGTGTCA
TACCCCATGGACCCAGCATTCACACATATGAGTCTATAGGGGCATTCCTA
TTGAAACCACCACATTCCGATACCTTGTATCCATAGCATTTTAGCCATGA
TATAATGCAAAATGAATTTAGTCCAACTTCAAAAGTCCCCATAATTTATC
TCACTATCAGCACTGTTTAAAACTCCAAAGTTCAAAGTCTCCTCTGAGAC
TCATGCAATTTCTTAATTATAATAAACTGTAAAATCAAAATAAAAAAACA
AATATTTCTAGCATATATGGAAGAGGATATACTATTCCAAAATGGAGGAA
AAGGAACATAGTGAGAAAATACTGAAGCAAAGCTACATTGAAAAGTTGTG
TGGTAGCTCTGCATCTTTATGTCTGATATCAAAGCACTCTTTGATATCCA
ACTTCTTTCATCTTTATTGACTGCAACAGACTACTATCTATGTGGCTGGT
TCCATTCCCTGTCATTAACTCTGTTTGGCAGGTATGTCATACCTCTGGCA
CCTCCTAATTTTTGCATTTTCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTCTCCTTATTGTCACATCACTAAAAT
TTTTAGTTCCTTGGTGTGTTCATCTTGACTATTCTTTCAAAATTACTATA
GTTTTTATTTTCCTTTTCTCATAGTTAACAAATAAGTGACTTAGCTCTTG
CTGTTTGCTACTTGGTGATCACAAATTTCTCTGAATACAGACTCACTTGA
CAGAATTCCAATGAATCATTTGGACAATGTGAGTCCAGAAGAGACACTTA
GCATCATGTCCATACCCCAGTGCCTAATTTATTTGAAAATTTTATTTTTA
CTTTTAATTATGTGTATATATTGGTTGTTAGTGAGTTTGTACATGTGCTT
AAAGATGTGCACAGAGGCCAGAGTGTCTAGCAGATCTTTCCCAAGTGAAG
TGATCTATCTGAAGTAGCTGCCTGGGGGAAAGTTGGGACCTCTACAAGAG
CAAGCTCTTTTAAACATTGCACTACTGTGGCCCTTCGAACCTCCCAGTTA
TTATTTTTAGTTCTAGAATGTCTGCATAGATTGCTGTTCTCTCTCTCTCC
CTCTCTCCCTCTCCCTCCCCCTCCTCCTTCCCCTCCCCTCCCCTTCACTC
TCTTTTTTATTTTTTTCTTTTTTCCCATCTCTTTTCCTTTTTTCTCCTCC
TCCGACCAATACGTCGTTTTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f14.g1 MSMg01no072_f14.g1 CHROMAT_FILE:
MSMg01no072_f14.g1 PHD_FILE: MSMg01no072_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:03 2005
         (535 letters)



>mm_chr18_87223458_87224392
          Length = 935

 Score = 1013 bits (524), Expect = 0.0
 Identities = 533/536 (99%), Gaps = 1/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctccttattgtca-catcactaaaatttttagttccttggtgtgttcatcttgact 59
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 200 tcttctccttattgtcaacatcactaaaatttttagttccttggtgtgctcatcttgact 259

                                                                       
Query: 60  attctttcaaaattactatagtttttattttccttttctcatagttaacaaataagtgac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attctttcaaaattactatagtttttattttccttttctcatagttaacaaataagtgac 319

                                                                       
Query: 120 ttagctcttgctgtttgctacttggtgatcacaaatttctctgaatacagactcacttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagctcttgctgtttgctacttggtgatcacaaatttctctgaatacagactcacttga 379

                                                                       
Query: 180 cagaattccaatgaatcatttggacaatgtgagtccagaagagacacttagcatcatgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaattccaatgaatcatttggacaatgtgagtccagaagagacacttagcatcatgtc 439

                                                                       
Query: 240 cataccccagtgcctaatttatttgaaaattttatttttacttttaattatgtgtatata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cataccccagtgcctaatttatttgaaaattttatttttacttttaattatgtgtatata 499

                                                                       
Query: 300 ttggttgttagtgagtttgtacatgtgcttaaagatgtgcacagaggccagagtgtctag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggttgttagtgagtttgtacatgtgcttaaagatgtgcacagaggccagagtgtctag 559

                                                                       
Query: 360 cagatctttcccaagtgaagtgatctatctgaagtagctgcctgggggaaagttgggacc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagatctttcccaagtgaagtgatctatctgaagtagctgcctgggggaaagttgggacc 619

                                                                       
Query: 420 tctacaagagcaagctcttttaaacattgcactactgtggcccttcgaacctcccagtta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctacaagagcaagctcttttaaacattgcactactgtggcccttcgaacctcccagtta 679

                                                                   
Query: 480 ttatttttagttctagaatgtctgcatagattgctgttctctctctctccctctct 535
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 ttatttttagttctagaatgtctgcatagattgctgttctctctctctctctctct 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)