BAC Information

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BAC

Clone NameMSMg01-072H23
Chromosome18 (Build37)
Map Location 51,748,306 - 51,748,496
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072H23.T7 (MSMg01no072_h23.b1)MSMg01-072H23.TJ (MSMg01no072_h23.g1)
ACCAG296027AG296028
length717709
length of high quality
(start - end)
398 (73 - 470)191 (371 - 561)
definitionCHROMAT_FILE: MSMg01no072_h23.b1 PHD_FILE: MSMg01no072_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:16 2005CHROMAT_FILE: MSMg01no072_h23.g1 PHD_FILE: MSMg01no072_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTCAGTTCCGAGCCCCATTTTTAACGGGGTTATTTGAGTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCGAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
AGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCCGTTCTG
TTCAGGAATTTTTCCCCTGTGCTCATATCTTCAAGGCTTTTCCCCACTTA
TTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACCAGGAGATAAGTATGGATGGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAGACTGCT
GAATAATAGTGGGAGACTTCAACATACCATTTTCGTCAATGGACAGATCG
TGTAATCAGAAACTATACAGGTACACTAGTGAAACTATTAGACGTTACGA
ATCCAATATACCTGACAGATATCTACCGATATTTTTATCCTAAAACAAAA
GGATATACCTTTCTTATCAGCATCTCACGGGACCTTCTCCATAATTGACC
ATATAATTGGTTCTAAN
ACAGTGGGAGGCCCGGNNGGCGCGGGCCTGCGGGACCGCGGAACNANAGA
AGGATTGACGNCACCGCACGGNGGGAAAGNGACNNCACGGNCGGGCNGAA
NNGNCNCATTCTCGCCACCAGACNGAGCANACNACCNANNNNCNGNGACN
AAAANNACAGAGGGAGACAACGCNNGCAGAAGGNGNGCCACANNAAANAN
CCCNAANAGAACNGANANGAANAAACNAGACCAACCAANNNANGCCTATT
ANAGAANANAANGAACCACNNACANGCAGAAAAACACANGAGAGCNAGAA
CCCANNGAAATTGTTTTTTTTTTAANNNGAANNNAAANGCAAACGCAGNA
CAAGGTTTTTCTCGCCCTCCTCTTTTCTCGTTTTTAGGCCAGTCACTGTG
TCTGAATAAAAGATTAGACAGGAATGAAGAAATCCTGTGCACAATATATT
TCCATTTTTCTTTTGAGACAGAGTCTAACTAGTTAGTCACCTATATGATT
CATTTGGAACTTGAAGCGGCATTCCCTCCATTGCTTCCCAAATGGGCTTT
GATTGCAGGAATGCACCAAGATGCCTGACCTTGAAGGACGCTTTTCATCC
TTTAGTGAAGTATTATACTACCAGATAACTTACTTATTCCAAACAGAATT
TTTTTTTCTGGAGAGGNATCGATACAGCACTCATGAATAAAAACATTTTC
AAACAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_h23.g1 MSMg01no072_h23.g1 CHROMAT_FILE:
MSMg01no072_h23.g1 PHD_FILE: MSMg01no072_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:16 2005
         (191 letters)



>mm_chr18_51748106_51748696
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttctcgtttttaggccagtcactgtgtctgaataaaagattagacaggaatgaaga 60
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 391 tctttactcgtttttaggccagtcactgtgtctgaatcaaagattagacaggaatgaaga 332

                                                                       
Query: 61  aatcctgtgcacaatatatttccatttttcttttgagacagagtctaactagttagtcac 120
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 331 aatcctgtgcacaatatatttcaatttttcttttgagccagagtctaactagttagtcac 272

                                                                       
Query: 121 ctatatgattcatttggaacttgaagcggcattccctccattgcttcccaaatgggcttt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 271 ctatatgattcatttggaacttgaagtggcattccctccattgcttcccgaatgggcttt 212

                      
Query: 181 gattgcaggaa 191
           |||||||||||
Sbjct: 211 gattgcaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)