BAC Information

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BAC

Clone NameMSMg01-072I04
Chromosome18 (Build37)
Map Location 87,588,942 - 87,589,446
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072I04.T7 (MSMg01no072_i04.b1)MSMg01-072I04.TJ (MSMg01no072_i04.g1)
ACCAG296037AG296038
length698695
length of high quality
(start - end)
419 (47 - 465)505 (74 - 578)
definitionCHROMAT_FILE: MSMg01no072_i04.b1 PHD_FILE: MSMg01no072_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:17 2005CHROMAT_FILE: MSMg01no072_i04.g1 PHD_FILE: MSMg01no072_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTCACCTGAGGCCTACTGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACCACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GACTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATAGTACTACCGAAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAATAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAATATACAATTTGCTAAACATATGAAACTCTC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCGACAAGACATAATCTCAGTTCA
CCGGAATACTTGAGGAAGTGTCACAATATTTTTCCAATTGATTTTTAGAA
GTTGTTGCCAGGGATGCACAGTAGGTAGCATAGGGTTTAGGAGGGTTAGC
CAGGACTTCATCGGGCAATTGGCTGCATGGACACAACATCTGGAGCAGTA
AGTAATCCTCTCCTACCAGAAAATATGAGTGCCCGAAACATATCCACATT
AACAAAATAGTTTGATCAGTCAACTAATAATGACAATTGCAAACATAAAA
TGGTTCAGGAGGATTCGTTACCTACTTTATATGTTAAACTATGGAATATA
TAACTTAAATGGAATGTGTTTTACAGCTCATGCTTAGCAAGAATATAGAA
GTCTCTCATACGCTGGAAATAAGTAGCATATAATTGAAGTATCATAATGT
AAATATGTACATTACTGAAAGATATTTGCATTGTGTATCCATTGCTGTTC
TTTATGGCCTTTTATGATTTATGTGTTCTCTCAGAGTTTATGTTTATATT
TCCTTTTTCTTTTTTTTTTTTTTACAGTTTATTTTCTAACTCATTTACTC
TCTCTAAATTTAAATGTAAGGATTTGGCACTGGCCTGTATAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_i04.g1 MSMg01no072_i04.g1 CHROMAT_FILE:
MSMg01no072_i04.g1 PHD_FILE: MSMg01no072_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:17 2005
         (505 letters)



>mm_chr18_87588742_87589646
          Length = 905

 Score =  961 bits (497), Expect = 0.0
 Identities = 503/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcgacaagacataatctcagttcaccggaatacttgaggaagtgtcacaatattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcgacaagacataatctcagttcaccggaatacttgaggaagtgtcacaatattttt 260

                                                                       
Query: 61  ccaattgatttttagaagttgttgccagggatgcacagtaggtagcatagggtttaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaattgatttttagaagttgttgccagggatgcacagtaggtagcatagggtttaggag 320

                                                                       
Query: 121 ggttagccaggacttcatcgggcaattggctgcatggacacaacatctggagcagtaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttagccaggacttcatcgggcaattggctgcatggacacaacatctggagcagtaagt 380

                                                                       
Query: 181 aatcctctcctaccagaaaatatgagtgcccgaaacatatccacattaacaaaatagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctctcctaccagaaaatatgagtgcccgaaacatatccacattaacaaaatagttt 440

                                                                       
Query: 241 gatcagtcaactaataatgacaattgcaaacataaaatggttcaggaggattcgttacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcagtcaactaataatgacaattgcaaacataaaatggttcaggaggattcgttacct 500

                                                                       
Query: 301 actttatatgttaaactatggaatatataacttaaatggaatgtgttttacagctcatgc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 actttatatgttaaactatggaatatataacttaaatagaatgtgttttacagctcatgc 560

                                                                       
Query: 361 ttagcaagaatatagaagtctctcatacgctggaaataagtagcatataattgaagtatc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ttagcaagaatatagaagtctctcatacgctggaaataagtagcatataattgaagtacc 620

                                                                       
Query: 421 ataatgtaaatatgtacattactgaaagatatttgcattgtgtatccattgctgttcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatgtaaatatgtacattactgaaagatatttgcattgtgtatccattgctgttcttt 680

                                    
Query: 481 atggccttttatgatttatgtgttc 505
           |||||||||||||||||||||||||
Sbjct: 681 atggccttttatgatttatgtgttc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)