BAC Information

Click to search

BAC

Clone NameMSMg01-072M23
Chromosome18 (Build37)
Map Location 5,141,652 - 5,141,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
Downstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M23.T7 (MSMg01no072_m23.b1)MSMg01-072M23.TJ (MSMg01no072_m23.g1)
ACCAG296260AG296261
length688693
length of high quality
(start - end)
571 (43 - 613)475 (75 - 549)
definitionCHROMAT_FILE: MSMg01no072_m23.b1 PHD_FILE: MSMg01no072_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005CHROMAT_FILE: MSMg01no072_m23.g1 PHD_FILE: MSMg01no072_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGGAAT
TCCTGCAGGCAACACGAGCTACCACAGTTTGTAATCTGTGTGTCCTACCC
TGAGTTAGGAGTGTTCCTACATCTGTAGGCACTTAACCCTTTGTGACCCT
GTGAGCAGATGGAGAAATGGATTTATTGCTTAGGGTTAATATTTGACTTG
GCAACTTAAAAAAACATTTTTTTGTTGTTACAGTTACACATACATATTGT
ACCCACTTGCCATGGCACATCTGGGGTTCAGAGGACAACTGGCAGCACAT
CTGGAGTTCAGAGGACAACTGGCAGCACATCTGGGGTTCAGAGGACAACT
GGCAGCACATCTGGAGTTCAGAGGACAACTGGCAGCACATCTGGAGTTCA
GAGGACAACTGGCAGCACATCTGGAGTTCAGAGGACAACTGGCAGCACAT
CTGGGGTTCAGAGGACAACTGGCAGCACATCTGGGGTTCAGAGGACAACT
GGCAGCACATCTGGGGTTCAGAGGACAACTGGCAGCACATCTGGAGTTCA
GAGGACAACTGGTGGGAGTCAGTCCTCTACTTCCACATTGTGGGTTCCAA
GGATCCAACTGATGTCATCAGGAGCGGTATCAAGCACCTTCCCCTGCTGG
TTCTTGATTGCAAAATTTTCCCATAGATTCAGTCCTTC
CGATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTCATTGATATTTAAAGTTGTTGA
AATATGTTTGTTAATTGCCTTCTTCATGTTGTTGATTTTTAGTAGTGTTG
TTTCTACTTTTTGTTTTGTTTTGTTGTTTTTCGAGACAGGGTTTCTCTGT
ATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA
CTCAGAAACTCGCCTGCCTCTGCTTCCCGGGTGCTGGGATTAAAGGTATG
TGCCACCACGCCCAGGAGTAGTGTTGTTTCTATTCAGTAGTATTTTGTGT
TCTACTAATTATGGATTCATATTTCTTTCCATAGTCTCTTGACAATTCTC
TTCAGTTCAAAATATTCTTTTCTGTATTTAGGCTCATTTGTTGAATAAAA
ATTTTAGACTCTTTATATTATGTAATGTTTTTCTTCTTGAATTATTACAG
ATAGTTTTGCTGGGTATATTACTCTAGGCTGGAAGTCCTAGTCTTTTAGG
ACTTGGAATGCATTGTTCCAGGACATTCTGGTTTTCCAAGTTTCCTTTAA
TAAATCATTATGGGTTTTTGTTCATATGCGACATAGATTTTTTTGCTTTA
GTTTTTTTCTTGTAGCTTTCAATATACTTTCTTTTTTATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m23.b1 MSMg01no072_m23.b1 CHROMAT_FILE:
MSMg01no072_m23.b1 PHD_FILE: MSMg01no072_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:40 2005
         (571 letters)



>mm_chr18_5141448_5142418
          Length = 971

 Score =  513 bits (265), Expect = e-149
 Identities = 268/269 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcaggcaacacgagctaccacagtttgtaatctgtgtgtcctaccctgagtt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcaggcaacaggagctaccacagtttgtaatctgtgtgtcctaccctgagtt 264

                                                                       
Query: 65  aggagtgttcctacatctgtaggcacttaaccctttgtgaccctgtgagcagatggagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagtgttcctacatctgtaggcacttaaccctttgtgaccctgtgagcagatggagaa 324

                                                                       
Query: 125 atggatttattgcttagggttaatatttgacttggcaacttaaaaaaacatttttttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggatttattgcttagggttaatatttgacttggcaacttaaaaaaacatttttttgtt 384

                                                                       
Query: 185 gttacagttacacatacatattgtacccacttgccatggcacatctggggttcagaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttacagttacacatacatattgtacccacttgccatggcacatctggggttcagaggac 444

                                        
Query: 245 aactggcagcacatctggagttcagagga 273
           |||||||||||||||||||||||||||||
Sbjct: 445 aactggcagcacatctggagttcagagga 473



 Score =  194 bits (100), Expect = 2e-53
 Identities = 106/108 (98%)
 Strand = Plus / Plus

                                                                       
Query: 463 gcacatctggggttcagaggacaactggcagcacatctggagttcagaggacaactggtg 522
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 423 gcacatctggggttcagaggacaactggcagcacatctggagttcagaggattactggtg 482

                                                           
Query: 523 ggagtcagtcctctacttccacattgtgggttccaaggatccaactga 570
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggagtcagtcctctacttccacattgtgggttccaaggatccaactga 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)