BAC Information

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BAC

Clone NameMSMg01-073E03
Chromosome18 (Build37)
Map Location 72,371,008 - 72,523,677
singlet/doubletdoublet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411, LOC100042955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E03.T7 (MSMg01no073_e03.b1)MSMg01-073E03.TJ (MSMg01no073_e03.g1)
ACCAG296601AG296602
length702686
length of high quality
(start - end)
653 (50 - 702)606 (81 - 686)
definitionCHROMAT_FILE: MSMg01no073_e03.b1 PHD_FILE: MSMg01no073_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005CHROMAT_FILE: MSMg01no073_e03.g1 PHD_FILE: MSMg01no073_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,523,029 - 72,523,677)(72,371,008 - 72,371,592)
sequence
AATATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATAAGAAAAGAAAAATCCCAAGTTTCTCATGGATCAGGGC
AAGGAGTTGTGCCTTCTATGATGCTTTACAAGGTGAAGTCAGAAACAAGA
AATTATTCAATTAAGCCTCTGTAGTTCACTGCTGTAGCAACAAATAGGCT
ATTTTGGAAGCAGTTCTCCAGACTCTGAAGGAGTATTCCCTCAGTACCAG
TGAACAGAGTTGTGCCAAAGTACCAATTTTCAAGAGTATTCAACTGCAGA
AATGACACTTCTCTATGTGCAAAAGAACCTGCCTTTGTTATTTGCTGAGC
TAGAGGGAAAGCTCCTTTCTCATTTTGGAAATCAATAAAGCTTTTTCTTC
TATTCCATGAGTTATTATAGAAAATGCTACCCATGTTCCAGAAGATGACT
TGTAGAAGACAATTACTAAGCTGGATCTAGCTCTGCTCTCCTTGTGGACA
GCTGTTTCTAGGCTCTGGAGTGTTGATTTGAAAGCTCTGAAGAACATGCA
TTCATGATTCTAGGCAGAGGTATCCCAGCTATTATAAAGAGTTTACAATG
TAGATATTTAAGGTATTTTGTTCTAGAGACCAGGCTAAGTTCCCCTGTGA
TTGATTTCTCATACCAGATAATCACCAGAATCCCATTTGAACAGAAGTTT
GA
TTTTTTNTTCTATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAAACACAGCAGATAT
CAAATGGGGTTCCCTTCATGCATACCCTTCTCCCTTCTATCTAGGATCGT
CCCATAGCAAAGGTAGTAAGTTCTCTGTGCACTCCGTATTCAGTCACCAG
TCCTCGTCTTGCATTATTACATCAAATAATATTGTAGAAGCAGAACAAGA
GCACTAATAGGGAAGAAGGAAGCAGCACACATTGCCTTTGCTTCTAGTTT
CTGGTTCCACTCAAGTTCTGATTCATTATGTTTTTCTGAAGGTTGTTTCA
CAAAAAAAAAATAAAAATAAAACAAAAAAAACCCACTTAATGCACTTAAT
GAGCAATTTCTAGTCATGAATTTTTTAAAAAAAATATTAGAGATAAGATA
ATTAAGGGGTACTGGAGCATTAGAAAGAATTTGGCTAACCAAACTTGAAT
CTTAAGAAAGAAACAGGGCTGAGGAAACACAGTTACATTAGAAGAAATCA
ACTGAAAATAGATACACCAGCAATTTCACTGAAACATTTTTTTTGCCTCT
TTGTTCTCAAAGATAAGATGATGCATGGTTCACTCTTTTTAGATAAACAC
TGGAAACTGAAATAGATAAGCAAGTTGTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e03.b1 MSMg01no073_e03.b1 CHROMAT_FILE:
MSMg01no073_e03.b1 PHD_FILE: MSMg01no073_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:16 2005
         (653 letters)



>mm_chr18_72522825_72523877
          Length = 1053

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataagaaaagaaaaatcccaagtttctcatggatcagggcaaggagttgtgcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattctataagaaaagaaaaatcccaagtttctcatggatcagggcaaggagttgtgcc 794

                                                                       
Query: 65  ttctatgatgctttacaaggtgaagtcagaaacaagaaattattcaattaagcctctgta 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttctacgatgctttacaaggtgaagtcagaaacaagaaattattcaattaagcctctgta 734

                                                                       
Query: 125 gttcactgctgtagcaacaaataggctattttggaagcagttctccagactctgaaggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gttcactgctgtagcaacaaataggctattttggaagcagttctccagactctgaaggag 674

                                                                       
Query: 185 tattccctcagtaccagtgaacagagttgtgccaaagtaccaattttcaagagtattcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tattccctcagtaccagtgaacagagttgtgccaaagtaccaattttcaagagtattcaa 614

                                                                       
Query: 245 ctgcagaaatgacacttctctatgtgcaaaagaacctgcctttgttatttgctgagctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgcagaaatgacacttctctatgtgcaaaagaacctgcctttgttatttgctgagctag 554

                                                                       
Query: 305 agggaaagctcctttctcattttggaaatcaataaagctttttcttctattccatgagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agggaaagctcctttctcattttggaaatcaataaagctttttcttctattccatgagtt 494

                                                                       
Query: 365 attatagaaaatgctacccatgttccagaagatgacttgtagaagacaattactaagctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 attatagaaaatgctacccatgttccagaagatgacttgtagaagacaattactaagctg 434

                                                                       
Query: 425 gatctagctctgctctccttgtggacagctgtttctaggctctggagtgttgatttgaaa 484
           || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 433 gagctagctctgctctccttgtggacagccgtttccaggctctggagtgttgatttgaaa 374

                                                                       
Query: 485 gctctgaagaacatgcattcatgattctaggcagaggtatcccagctattataaagagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctctgaagaacatgcattcatgattctaggcagaggtatcccagctattataaagagtt 314

                                                                       
Query: 545 tacaatgtagatatttaaggtattttgttctagagaccaggctaagttcccctgtgattg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tacaatgtagatatttaaggtattttgttctagagaccaggctaagttcccctgtgattg 254

                                                            
Query: 605 atttctcataccagataatcaccagaatcccatttgaacagaagtttga 653
           ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 atttctcataccagataatcaccagaatcccgtttgaacagaagtttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_e03.g1 MSMg01no073_e03.g1 CHROMAT_FILE:
MSMg01no073_e03.g1 PHD_FILE: MSMg01no073_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:16 2005
         (606 letters)



>mm_chr18_72370808_72371814
          Length = 1007

 Score =  996 bits (515), Expect = 0.0
 Identities = 573/603 (95%), Gaps = 19/603 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagaaacacagcagatatcaaatggggttcccttcatgcatacccttctcccttctat 60
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tacagaaacgcagcagatatcaaatggggttaccttcatgcatacccttctcccttctat 260

                                                                       
Query: 61  ctaggatcgtcccatagcaaaggtagtaagttctctgtgcactccgtattcagtcaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggatcgtcccatagcaaaggtagtaagttctctgtgcactccgtattcagtcaccag 320

                                                                       
Query: 121 tcctcgtcttgcattattacatcaaataatattgtagaagcagaacaagagcactaatag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcgtcttgcattcttacatcaaataatattgtagaagcagaacaagagcactaatag 380

                                                                       
Query: 181 ggaagaaggaagcagcacacattgcctttgcttctagtttctggttccactcaagttctg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagaagcaagcagcacacattgcctttgcttctagtttctggttccactcaagttctg 440

                                                                       
Query: 241 attcattatgttttt-ctgaaggttgtttcacaaaaaaaaaataaaaataaaacaaaaaa 299
           ||||||||||||||| |||||||||| ||| |||||||||||               |||
Sbjct: 441 attcattatgttttttctgaaggttgcttcgcaaaaaaaaaa---------------aaa 485

                                                                       
Query: 300 aacccacttaatgcacttaatgagcaatttctagtcatgaattttttaaaaaaaatatta 359
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 486 aacccacttaatgcacttaatgagcaatttctagtcatgaattt---aaaaaaaatatta 542

                                                                       
Query: 360 gagataagataattaaggggtactggagcattagaaagaatttggctaaccaaacttgaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 543 gagataagataattaaggggtactggagcattagaaagaatttggctaaccaaacttgag 602

                                                                       
Query: 420 tcttaagaaagaaacagggctgaggaaacacagttacattagaagaaatcaactgaaaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcttaagaaagaaacagggctgaggaaacacagttacattagaagaaatcaactgaaaat 662

                                                                       
Query: 480 agatacaccagcaatttcactgaaacattttttttgcctctttgttctcaaagataagat 539
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acatacaccagcaatttcactgaaacattttttttgcctctttgttctcaaagataagat 722

                                                                       
Query: 540 gatgcatggttcactctttttagataaacactggaaactgaaatagataagcaagttgta 599
           ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gatgcatggttgactctgtgtagataaacactggaaactgaaatagataagcaagttgta 782

              
Query: 600 ttt 602
           |||
Sbjct: 783 ttt 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)