BAC Information

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BAC

Clone NameMSMg01-074A13
Chromosome18 (Build37)
Map Location 75,306,487 - 75,306,717
singlet/doubletsinglet
Overlap geneDym
Upstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneLOC628356, EG667777, Smad7, Gm672, Zbtb7c, 4833419G08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A13.T7 (MSMg01no074_a13.b1)MSMg01-074A13.TJ (MSMg01no074_a13.g1)
ACCAG297184AG297185
length715711
length of high quality
(start - end)
68 (43 - 110)231 (125 - 355)
definitionCHROMAT_FILE: MSMg01no074_a13.b1 PHD_FILE: MSMg01no074_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:17 2005CHROMAT_FILE: MSMg01no074_a13.g1 PHD_FILE: MSMg01no074_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTAAT
TCTTTACTTCCTAATTAAGCTGTAACGTAGCTTAAGACTTTTTGCTTGTA
TTTTTTTTTAGTAAACGCTGGTATTTTTATGTGTTTCATTTGTTTTGTGC
AGCCTTGGCTGGCTGTCATCAGCTAACTCTTTAGTGTCTCCTTAAACATA
CGAACATCTTACCGATTTGAGGGGGAAGACACCCACACATGAAAGTTTTC
TATCTCTGTTTTAGAAGTGCCATTTCTTTGCCACCCAAACAGATGCATAC
ATACTCTTGTTTTGTTTTCTATAGGCCGCGGAGAAAGGTCGCCACCATTT
TGTTTTTTGCTCCCCCCTGACCCTCTTCAGTTACAGGGTTTGATACAATG
TTCTGCCCGCCCCATTCATACAAACAAAAATTACAGGGAGTCTATCCCTT
CACTGCCCCGATTCTTGTTTACAGCTTGCTTTATCACTGAATAATTCTCC
TGTTCACTATCCCTTCCTTTTGACTTCTTCCCCCTTATCCCTTCCCCCCT
TCCCCCTTTCCTTTTTTCTTTCCCCCCCCCACCCCCCTTTTCCTTCCACT
CTTTCCTTCTCTCGCCCCCTCCTTTTTTCGTCTTCACTTCATTGTCCTAC
TCCCCCTTCCTTTTTTTCCCCTTCCTTTTTTTCCTCTCTTCCCTCTTCTC
TTTTCCATTTTCCCC
TCGATGAAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTCAGGGTCTTAATGGAAGTCAC
AGGAAAGAGTCAATGATGCACCCCATATTTAATTCAAACACTCACTACAC
TTTGTTTGGCAGTCTGAAATAGATGACTTATAATTAATAAAGAAGACTTT
CTCCAGAAGAATCCATATTCTACCCTCCAACAGATAATATTCCACAGAGC
AGATATAAGACTAAACAAAAAAACCAGGCAGAAAGGCCAATAATCTACAC
AGAAATAACAGACCAAAGTTTGTATCTCACAAATATATTTTTAAATGAAC
ATAGAGTTTATTTTTATGCCCCCCACCCTTAAAAAGTANAGACTTCATAA
ATATACTAAAGAACGCCACTTAATACAAAAAAATGTTATCCACGGGGGAA
CTCCGTGAATCCCAAGACTGACCTTAGTGAAACATCTTTCACGAAGTGTG
CTCTATTTTCCCCTTAGCTATTCACTCGTCTGCCCCTCTGAGAACACACA
CGCACTTACTCCCACATCCTCCGACACTCTATTTTACACATCCCACTCCA
CCTCTTTCTCTACCCTCACCTTCGTCTTGCATTCACCCCCTTGTTCCCAC
TCCATTTTTTCCTTTCTACCGCAGCTCTGTAAACACCCCTGCCGCCCCCC
TAGTCTTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a13.g1 MSMg01no074_a13.g1 CHROMAT_FILE:
MSMg01no074_a13.g1 PHD_FILE: MSMg01no074_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:17 2005
         (231 letters)



>mm_chr18_75306287_75306917
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttaattcaaacactcactacactttgtttggcagtctgaaatagatgacttataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atatttaattcaaacactcactacactttgtttggcagtctgaaatagatgacttataat 372

                                                                       
Query: 61  taataaagaagactttctccagaagaatccatattctaccctccaacagataatattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taataaagaagactttctccagaagaatccatattctaccctccaacagataatattcca 312

                                                                       
Query: 121 cagagcagatataagactaaacaaaaaaaccaggcagaaaggccaataatctacacagaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 cagagcagatataagactaaacaacaaaaccaggcagaaaggccaataatctacacagaa 252

                                                              
Query: 181 ataacagaccaaagtttgtatctcacaaatatatttttaaatgaacataga 231
           |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ataagagaccaaagtttgtatctcacaaatatatttttaaatgaacataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)