BAC Information

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BAC

Clone NameMSMg01-074J11
Chromosome18 (Build37)
Map Location 29,230,251 - 29,230,360
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074J11.T7 (MSMg01no074_j11.b1)MSMg01-074J11.TJ (MSMg01no074_j11.g1)
ACCAG297611AG297612
length772793
length of high quality
(start - end)
115 (44 - 158)---
definitionCHROMAT_FILE: MSMg01no074_j11.b1 PHD_FILE: MSMg01no074_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:00 2005CHROMAT_FILE: MSMg01no074_j11.g1 PHD_FILE: MSMg01no074_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATNNTTTGCGGCGCTATACGACTACTATAGGCAGAGGATCCGCGGA
ATTCTGTCAACAGGCTCTTCTGCACCTGTTTATATGTAAATGTATTTAGC
CAAGAAGACTCCCCTTCCTTTACCTCCTGCTGATTTCTGTTTCAATTCCT
TTAGTTCAGGTTGTCTGGCAAAAATAAGTAATGTATGAATAAGATAGTAA
ATTATTATACAAATTATATTTATTAATATATATTAAAAAAAAATTTGCTG
TATTTTATCATTCTTAGATTTTTAATATTTGCCTATATTTATTAATAATA
TAAATTTTATATATTTTTGCCGCCTTTTTTTTGTTTTTGGTTATAGGTGT
CACCCAGCAGGCACCATTTTTTTTTTGTTTTTCACCCCCCCCCCCCCCCA
TATTTCTAATTATTTTTAAGCAATAATAATCGTGCCCCACCCATTAATAA
AAAAAAATATATATGTTGGTGGGGGCTTGATTCAAACTGTATTTGAATAT
TATTTATAGATGAAGTTTATATATAACAATACATAAATTAAATCATTTAA
ATCTTCAGATTCAAATATTATTCACCATGACTACAGTTTATGCAGTGGCT
TGTGTTGCGTTATTTGTCTTTCATTATTTTATTTATTATTTTTGTTATTT
TCTTTTTTTATTATATATTCTCATAATTGTTCATTCATAATTACTTATTA
ATTTTTAATAAGAATTTTTACATATATATCAATTTTCTTCTTTTCTTTCT
TCCTTTTCTACATAATTCCACC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGACACGAGAAAGTGTATAGGATAAGAATGTGACGTGTTTTT
CCCGGTGCTCTTTTCCCCCCGCCGTTCTGTGCGGCGTAGGGGTGCTGCGG
CTGCCCTCCCTTGTTCGGCGCCATCTTTAAACGCCGCTGACTTCGCACCG
TTTCGCCTTGCGGGCGCGGCTCTTTCGGCGCGATGTCGTGTCTGTAGCAA
TCGGCTATCGTAGAAATGTGTGGGAGGGGTGAAATAAATGTGGATGGATT
GTGAGGGGGGGCGCCATATGGAGCCAACGTTTTTTTTTTACGAGCCCCCA
GATGAAGTTATAGGGTAAAAAATTTTATTTTTTCCCCCCCCACCCCCACC
CAATTTTATTTACGGTAAGAAAAGCACCAAGCTCTGGGCCACCCAATCTT
AAATAAAAATCCTATCGTGAGGACGGAGAAGGAAAAAAGATATAACCGGC
TCAATAGATGAGCATCATCAAATTTGCGTAAGATATAAAAAAGTAGCTAT
ATTAAGCGCAAAGAGAAAAGAGTCTATAGATAACAAAAGCAATAGATTTG
AGCCACCCGACGATTTCGACACGAGAAAAACAATGAATAAATACATACAT
ACAACCTAGAGGTTAATTATAATAAAACTGGTACTACGGGATATAGTTTA
TGATGTAATGTCTTTAACAAGACACGAGAAAAAAACGAAACACCTGATCC
GTTGGCAATACAAGCGAGAGAACGATATTTTTTGGCGATAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_j11.b1 MSMg01no074_j11.b1 CHROMAT_FILE:
MSMg01no074_j11.b1 PHD_FILE: MSMg01no074_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:00 2005
         (115 letters)



>mm_chr18_29230046_29230560
          Length = 515

 Score =  182 bits (94), Expect = 6e-51
 Identities = 106/110 (96%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgtcaacaggctcttctgcacctgtttatatgtaaatgtatttagccaagaaga 65
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 315 gaattctgtcaacaggatcttctgcacctgtttatatgtaaatgtctttagccaagaaga 256

                                                             
Query: 66  ctccccttcctttacctcctgctgatttctgtttcaattcctttagttca 115
           || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 255 cttcccttcctttatctcctgctgatttctgtttcaattcctttagttca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)