BAC Information

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BAC

Clone NameMSMg01-075L19
Chromosome18 (Build37)
Map Location 77,577,779 - 77,578,149
singlet/doubletsinglet
Overlap geneLoxhd1
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5
Downstream geneRnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L19.T7 (MSMg01no075_l19.b1)MSMg01-075L19.TJ (MSMg01no075_l19.g1)
ACCAG298482AG298483
length681678
length of high quality
(start - end)
370 (41 - 410)241 (70 - 310)
definitionCHROMAT_FILE: MSMg01no075_l19.b1 PHD_FILE: MSMg01no075_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:28 2005CHROMAT_FILE: MSMg01no075_l19.g1 PHD_FILE: MSMg01no075_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTTTATGCCTGTTTTCTGTTCATAGTGAGTTAGTCCCGCGCTCTTTCTC
CTTTATTAAGTTGAAGCACTGTGCACTGGATGACTGTGCTTTCTAATGCT
TAGCCAACTCTGTGTTGCTTTTTTACGCTAAACTTAGTGATAGCAGTTAC
CATGAAAGACGTTCTCCTTCAAATAATAATTTTTTAAAAAAATATTTTCT
TATCTGCAAAAAAATCTTAAAAGAGTTTTTTTTTAAATTAAGATTTAATG
AGAAAGTAAGATTTATAAGTTCCATTTCCTGAAGGTCCTAACACAGACAC
CTGTGCCCTTAGGGCTGGGGAGGCTGCTGAGCAGTGAGTGGGTCCCACCA
GTGGACCTCACACCCCAGACATGTACTGTCTGCCTCTATAGGTGGTGATC
CTGTGCCCCTTCACTGGCATTCAGCAGACTTTCCCCTGCAGCAACTGGCT
GGATGAGAAGAAGGCAGACGGGCTGATTGAGAGGCAGCTCTATGAGATGG
TGTCTCTGAGGAAGAATCGGCTGAAAAGTAAGTTTGAGGGACCCAGAATC
TGGGGTCCTCCCAGATAGAAGCTCAGTTCTGCAAGGTCCAGGCCATGCAC
TCTTGCGGAGAGCAGCATCCCCTAAACTGAA
CGATGAAGTGGTAGGCCTGGCGGCGCCTGTTTTCTGACTTGAGGTGAACT
ATAGAAGTACCGCAAAATCACTATGTTGACCAGGCTAGTCTTGAACTCAT
GGAGATCCACCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGGACTGTGT
CCTTATGTCCAGCTTAATTTCTTAATTGTCCGTCTTGACTCATTTTTTTT
TTTTCATTCAGGAGTAAGTTGTTCAGTTTTCATGAGTTTTTAAGTTTTCT
GTTCTTTTTGTTGTTGTTGATATCCAGCTTTAATCCGTGGTGGTCAGATA
AGATATAGGTTTTCTCCTGAAGTTTCTTGTATCTGTTGAAACTTGCTTTG
TGTCCGAATATGCGCCAAGTCTTAGAGACAGTTCTATGAGCTGCAGTTCT
TTGACCTGCTTACCGCCATTAAAATCTCCCACTATCAGTGCATGAGGGTC
AATATGTGATTTAAGCTATAATAGTGTTTCTTTTGTGAACTTGGGTGCCC
CTTTGTTTGGAGCATAGATGTTAAGAATTGGAATGTCCTCTTGGCGGATT
TTTTCTTTGATGAGTATAAAGTGTCCTTCCCTATCACTTCTGATTAGTGT
TGGTTTGAAGCCTATTTTGTCAGACATTAAAAAGGCTACACTATTTTGCT
TCTTAGGTCAGTTTGCTTGGAATATCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l19.b1 MSMg01no075_l19.b1 CHROMAT_FILE:
MSMg01no075_l19.b1 PHD_FILE: MSMg01no075_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:28 2005
         (370 letters)



>mm_chr18_77577575_77578349
          Length = 775

 Score =  632 bits (327), Expect = 0.0
 Identities = 360/373 (96%), Gaps = 9/373 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttta-tgcctgttttctgttcatagtgagttagtcccgcgctctttctcctt 63
           |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtttactg-ctgttttctgttcgtagtgagttagtcccgcgctctttctcctt 263

                                                                       
Query: 64  tattaagttgaagcactgtgcactggatgactgtgctttctaatgcttagccaactctgt 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 tattaagttgaagcactgtgcactggttgactgtgctttctaatgcttagccaactctgt 323

                                                                       
Query: 124 gttgcttttttacgctaaacttagtgatagcagttaccatgaaagacgttctccttcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgcttttttacgctaaacttagtgatagcagttaccatgaaagacgttctccttcaaa 383

                                                                       
Query: 184 taataatttttt-aaaaaaatattttcttatctgcaaaaaaa-tcttaaaagag----tt 237
           |||||||||||| |||||||| |||||||||||||||||||| |||||||||||    ||
Sbjct: 384 taataatttttttaaaaaaat-ttttcttatctgcaaaaaaaatcttaaaagaggttttt 442

                                                                       
Query: 238 tttttttaaattaagatttaatgagaaagtaagatttataagttccatttcctgaaggtc 297
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 tttttttaaattaagatttaatgagaaagtaagatttaaaagttccatttcctgaaggtc 502

                                                                       
Query: 298 ctaacacagacacctgtgcccttagggctggggaggctgctgagcagtgagtgggtccca 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 503 ctaacacagacacctgtgcccttagggctggggaggctgctgagcagtgagtggatccca 562

                        
Query: 358 ccagtggacctca 370
           |||||||||||||
Sbjct: 563 ccagtggacctca 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 775
Length adjustment: 9
Effective length of query: 361
Effective length of database: 766
Effective search space:   276526
Effective search space used:   276526
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)