BAC Information

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BAC

Clone NameMSMg01-076D17
Chromosome18 (Build37)
Map Location 88,721,666 - 88,867,744
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D17.T7 (MSMg01no076_d17.b1)MSMg01-076D17.TJ (MSMg01no076_d17.g1)
ACCAG298858AG298859
length715708
length of high quality
(start - end)
483 (41 - 523)201 (53 - 253)
definitionCHROMAT_FILE: MSMg01no076_d17.b1 PHD_FILE: MSMg01no076_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:08 2005CHROMAT_FILE: MSMg01no076_d17.g1 PHD_FILE: MSMg01no076_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,867,266 - 88,867,744)(88,721,666 - 88,721,866)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGACAATGTCCATGTATCTAAATGTCTACTGACATAATCAGTCTCATTCC
TCCTTAACCAAGTGTAATTTATTTAGCAGCTTCCGACAGTGAATGTATTG
TTTCAATTCTGAAGGGCTGAAGTAAAAGTATCCCTGTAGCAGTTCACATT
TCTGAGCTAAGGCAGGTTTCTTTTCATAGTGGTAGCTGCAAAGGGAACTT
CCTTACTGCTCCTATGTGGCCCCCCTGTCTTCATGACAACAAGGCTCCAG
GGCTTGTCTATCTTTAAATATTGTCATTCCTTAGCATTTCTGCAACTCTG
ATATCAACTGCAAAATTTCTGCTCAAAATTTTAAAACTTAATTCTGTAAG
AATTTCATGCAATATATTTTGATCAAACTCATTCCTCAACTCCTCCTACC
AATTCCTTCTAGATCAACTCTTCCTACCCCTCCAACTTATTTTCTCTCTT
ACAACATTTAATAGCCAAGTGACTCAACTCGACAGTGCTGTCCATGTGCT
TCTGGGTATGGTACCATCCCCTGATACATGCTTAACCCAATAAGGAGACA
AATCTTTAACCAATACTGGCTTTCTCACCTAGAAACTTTCCTCTTCAGAA
TTTGACAGTTAGGGGACTGAACTCCTGAAATCTTTCCGGATTTGATACTA
AATTGCTTCTGACTT
GGCGGCGCCTGGTTCCTTATTGAGGTGAACTATAGAAGGTTTCCAAAATA
CACTTGCTCCTTTAGTTGTGACATCTGTATATTTCTATGAACAATGAGAG
GCCCTATCATTGGGTTTTCAGGTCTTAGATTTCAGAAAGCTATCAGCAAC
TACACCCTATGTCACACACCCTCTGTGATGGTTTGTATATCCTTGGACCA
GGGAGTGGCACCATCTGGAGGTATGGCCTTGTTGCTATAGATGTGACCTG
GTTGGAATGGGTGTGTCACTGTGGGTGTGCTTATAAGACCCCCACTTTAG
CTGCCTTCAAGACAGTCTTCCACTAGCAGCCTTTGTATGACGACCCACCC
CCCCTCAGCTCCTTCTGAGCTATGTCTGCCTGGATACTGCCTTGCTCCCC
CCTCGATCTCCATGGATCGAATCTTTGCATCTGTCACCCATCCTCAATTA
CCCGCTGCTCCTTATTTTACTTGTCCCTCGCTTTGGCGCCCGTCTCTCTG
CCTTATATTTCTAATCCATATCCTTCTTCACTCTTCTTAAACCTTATCCC
CCACCATACACACCCCTCCAAATACTTGTTTCCCTCTTCTTTATCCCCCA
TTCCCTCTTCTTCCATTTTTACCTCCTCATTTCTCCCAAACATCTTTTTT
TTTCTTTTTTCCCTTTACACTCCCCCCCTCTCTCTCCACCCATTATCACC
CCACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d17.b1 MSMg01no076_d17.b1 CHROMAT_FILE:
MSMg01no076_d17.b1 PHD_FILE: MSMg01no076_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:08 2005
         (483 letters)



>mm_chr18_88867198_88868080
          Length = 883

 Score =  857 bits (443), Expect = 0.0
 Identities = 470/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacaatgtccatgtatctaaatgtctactgacataatcagtctcattcctcct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaattcagacaatgtctatgtatctaaatgtctactgacataatcagtctcattcctcct 488

                                                                       
Query: 65  taaccaagtgtaatttatttagcagcttccgacagtgaatgtattgtttcaattctgaag 124
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 487 taaccaagtgtaatttatttatcagcttccgacagtgaatgaattgtttcaattctgaag 428

                                                                       
Query: 125 ggctgaagtaaaagtatccctgtagcagttcacatttctgagctaaggcaggtttctttt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct: 427 ggctgaagtaaaagtatccctgtagcagttcacatttctgagccaagacaggcttctttt 368

                                                                       
Query: 185 catagtggtagctgcaaagggaacttccttactgctcctatgtggcccccctgtcttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 367 catagtggtagctgcaaagggaacttccttactgctcctatgtggcccctctgtcttcat 308

                                                                       
Query: 245 gacaacaaggctccagggcttgtctatctttaaatattgtcattccttagcatttctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacaacaaggctccagggcttgtctatctttaaatattgtcattccttagcatttctgca 248

                                                                       
Query: 305 actctgatatcaactgcaaaatttctgctcaaaattttaaaacttaattctgtaagaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 actctgatatcaactgcaaaatttctgctcaaaattttaaaacttaattctgtaagaatt 188

                                                                       
Query: 365 tcatgcaatatattttgatcaaactcattcctcaactcctcctaccaattccttctagat 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcatgcaatgtattttgatcaaactcattcctcaactcctcctaccaattccttctagat 128

                                                                      
Query: 425 caactcttcctacccctccaacttattttctctcttacaacatttaatagccaagtgac 483
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 127 caactcttcctacccctccaacttattttctctcttaaaacatttaatagccaagtgac 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_d17.g1 MSMg01no076_d17.g1 CHROMAT_FILE:
MSMg01no076_d17.g1 PHD_FILE: MSMg01no076_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:08 2005
         (201 letters)



>mm_chr18_88721466_88722066
          Length = 601

 Score =  335 bits (173), Expect = 1e-96
 Identities = 194/201 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgctcctttagttgtgacatctgtatatttctatgaacaatgagaggccctatcattg 60
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cttgctccttttgttgtgacatctgtatatttctatcaacaatgagaggccctatcattg 260

                                                                       
Query: 61  ggttttcaggtcttagatttcagaaagctatcagcaactacaccctatgtcacacaccct 120
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttctggtcttagatttcagagagctatcagcaactacaccctatgtcacacaccct 320

                                                                       
Query: 121 ctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttgt 380

                                
Query: 181 tgctatagatgtgacctggtt 201
           ||  |||| ||||||||||||
Sbjct: 381 tggaataggtgtgacctggtt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)