MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-076K06
Chromosome	18 (Build37)
Map Location	60,225,300 - 60,225,862
singlet/doublet	singlet
Overlap gene	none
Upstream gene	A730017C20Rik, 4833446K15Rik, LOC667549
Downstream gene	EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb
Link	Open Mouse BAC browser

Click to get alignment info.

name	A730017C20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225583 MGI:2442934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4833446K15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78923 MGI:1926173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667549 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 260 ESTs, 2 Proteins pseudo : _no_value

name	EG240327 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240327 MGI:3644953
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546714 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546714
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins pseudo : _no_value

name	EG225594 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225594 MGI:3643814
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	F830016B08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240328 MGI:3588218
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 21 Proteins

name	LOC667578 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	EG667584 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667584 MGI:3644347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 Proteins

name	LOC435565 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Iigp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60440 MGI:1926259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629292 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629292 MGI:3643572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins

name	LOC667597 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010002N04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106878 MGI:1917088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dctn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67665 MGI:1914915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66810 MGI:1914060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myoz3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170947 MGI:2179296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Synpo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104027 MGI:1099446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 55 ESTs, 3 Proteins

name	LOC100042675 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Ndst1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15531 MGI:104719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20044 MGI:98107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667619 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667619
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 5 Proteins pseudo : _no_value

name	Cd74 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16149 MGI:96534
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tcof1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21453 MGI:892003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042699 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042699
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Arsi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545260 MGI:2670959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Camk2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12322 MGI:88256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Slc6a7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240332 MGI:2147363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12590 MGI:88360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdgfrb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18596 MGI:97531
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A730017C20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366047 GeneID:225583 MGI:2442934
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A730017C20 gene transcript_id : NM_173759.3

name	4833446K15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486748 GeneID:78923 MGI:1926173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833446K15 gene transcript_id : NM_001081328.1

name	EG240327 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382131 GeneID:240327 MGI:3644953
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG240327 transcript_id : NM_001033767.2

name	EG225594 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384902 GeneID:225594 MGI:3643814
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG225594 transcript_id : NM_001034859.2

name	F830016B08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404495 GeneID:240328 MGI:3588218
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 21 Proteins product : RIKEN cDNA F830016B08 gene transcript_id : XM_140380.6

name	EG667584 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404496 GeneID:667584 MGI:3644347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 Proteins product : predicted gene, EG667584 transcript_id : XM_991343.1

name	LOC435565 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:142378650 GeneID:435565
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon-inducible GTPase-like transcript_id : NM_001013828.2

name	Iigp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49274636 GeneID:60440 MGI:1926259
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon inducible GTPase 1 transcript_id : NM_021792.3

name	EG629292 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404498 GeneID:629292 MGI:3643572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins product : predicted gene, EG629292 transcript_id : XM_894152.2

name	LOC667597 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269599 GeneID:667597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical LOC667597 transcript_id : XM_001471581.1

name	2010002N04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125991226 GeneID:106878 MGI:1917088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010002N04 gene transcript_id : NM_134133.2

name	Dctn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131213 GeneID:67665 MGI:1914915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynactin 4 transcript_id : NM_026302.3

name	Rbm22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802908 GeneID:66810 MGI:1914060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 22 transcript_id : NM_025776.2

name	Myoz3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371096 GeneID:170947 MGI:2179296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myozenin 3 transcript_id : NM_133363.2

name	Synpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269853 GeneID:104027 MGI:1099446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 55 ESTs, 3 Proteins product : synaptopodin, transcript variant 1 transcript_id : XM_001479956.1

name	Synpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269855 GeneID:104027 MGI:1099446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 54 ESTs, 3 Proteins product : synaptopodin, transcript variant 2 transcript_id : XM_001479958.1

name	LOC100042675 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269785 GeneID:100042675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100042675 transcript_id : XM_001478620.1

name	Ndst1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227210 GeneID:15531 MGI:104719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 transcript_id : NM_008306.3

name	Rps14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362340 GeneID:20044 MGI:98107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S14 transcript_id : NM_020600.3

name	Cd74 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624769 GeneID:16149 MGI:96534
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) transcript_id : NM_001042605.1

name	Cd74 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624778 GeneID:16149 MGI:96534
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) transcript_id : NM_010545.3

name	Tcof1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130121 GeneID:21453 MGI:892003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Treacher Collins Franceschetti syndrome 1, homolog transcript_id : NM_011552.2

name	Arsi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370327 GeneID:545260 MGI:2670959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arylsulfatase i transcript_id : NM_001038499.1

name	Camk2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388229 GeneID:12322 MGI:88256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium/calmodulin-dependent protein kinase II alpha transcript_id : NM_177407.3

name	Camk2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130259 GeneID:12322 MGI:88256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium/calmodulin-dependent protein kinase II alpha transcript_id : NM_009792.2

name	Slc6a7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41235729 GeneID:240332 MGI:2147363
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 transcript_id : NM_201353.1

name	Cdx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46559385 GeneID:12590 MGI:88360
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caudal type homeo box 1 transcript_id : NM_009880.2

name	Pdgfrb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679258 GeneID:18596 MGI:97531
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet derived growth factor receptor, beta polypeptide transcript_id : NM_008809.1

name	A730017C20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424605 CCDS:CCDS29267.1 GeneID:225583 MGI:2442934
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC225583 protein_id : NP_776120.1

name	4833446K15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486749 GeneID:78923 MGI:1926173
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC78923 protein_id : NP_001074797.1

name	EG240327 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702067 CCDS:CCDS29268.1 GeneID:240327 MGI:3644953
definition	codon_start : 1 product : hypothetical protein LOC240327 protein_id : NP_001028939.1

name	EG225594 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77861889 GeneID:225594 MGI:3643814
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC225594 protein_id : NP_001030031.1

name	F830016B08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996435 GeneID:240328 MGI:3588218
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140380.5

name	EG667584 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404497 GeneID:667584 MGI:3644347
definition	codon_start : 1 product : similar to CDNA sequence BC023105 protein_id : XP_996437.1

name	LOC435565 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:62000686 GeneID:435565
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC435565 protein_id : NP_001013850.1

name	Iigp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49274637 CCDS:CCDS29270.1 GeneID:60440 MGI:1926259
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0019003 - GDP binding [Evidence IDA]; GO:0005525 - GTP binding [Evidence IDA]; GO:0003924 - GTPase activity [Evidence IDA] [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence TAS] codon_start : 1 exception : mismatches in translation product : interferon-inducible GTPase protein_id : NP_068564.3

name	EG629292 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996437 GeneID:629292 MGI:3643572
definition	codon_start : 1 product : similar to RIKEN cDNA 2610318N02 gene protein_id : XP_899245.1

name	LOC667597 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269600 GeneID:667597
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471631.1

name	2010002N04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527364 GeneID:106878 MGI:1917088
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : putative small membrane protein NID67 protein_id : NP_598894.1

name	Dctn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385798 GeneID:67665 MGI:1914915
definition	GO_component : GO:0005868 - cytoplasmic dynein complex [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] codon_start : 1 product : dynactin 4 protein_id : NP_080578.1

name	Rbm22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625591 CCDS:CCDS29272.1 GeneID:66810 MGI:1914060
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : RNA binding motif protein 22 protein_id : NP_080052.1

name	Myoz3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19111172 CCDS:CCDS29273.1 GeneID:170947 MGI:2179296
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0030018 - Z disc [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : calsarcin-3 product : myozenin 3 protein_id : NP_579941.1

name	Synpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269854 GeneID:104027 MGI:1099446
definition	codon_start : 1 product : synaptopodin isoform 1 protein_id : XP_001480006.1

name	Synpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269856 GeneID:104027 MGI:1099446
definition	codon_start : 1 product : synaptopodin isoform 2 protein_id : XP_001480008.1

name	LOC100042675 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269786 GeneID:100042675
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478670.1

name	Ndst1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42734444 GeneID:15531 MGI:104719
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0015016 - [heparan sulfate]-glucosamine N-sulfotransferase activity [Evidence TAS] GO_process : GO:0009790 - embryonic development [Evidence IGI]; GO:0048702 - embryonic neurocranium morphogenesis [Evidence IMP]; GO:0048703 - embryonic viscerocranium morphogenesis [Evidence IMP]; GO:0008543 - fibroblast growth factor receptor signaling pathway [Evidence IMP]; GO:0030900 - forebrain development [Evidence IGI] [Evidence IMP]; GO:0030203 - glycosaminoglycan metabolism [Evidence IMP]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0000165 - MAPKKK cascade [Evidence IMP]; GO:0030901 - midbrain development [Evidence IGI]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0000271 - polysaccharide biosynthesis [Evidence IMP]; GO:0006476 - protein amino acid deacetylation [Evidence TAS]; GO:0006477 - protein amino acid sulfation [Evidence TAS] [Evidence IMP]; GO:0007585 - respiratory gaseous exchange [Evidence IMP]; GO:0007224 - smoothened signaling pathway [Evidence IGI] codon_start : 1 note : heparan sulfate-N-deacetylase/N-sulfotransferase; N-deacetylase/N-sulfotransferase-1; glucosaminyl N-deacetylase/N-sulfotransferase 1 product : N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein_id : NP_032332.2

name	Rps14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981100 CCDS:CCDS29274.1 GeneID:20044 MGI:98107
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005843 - cytosolic small ribosomal subunit (sensu Eukaryota) [Evidence ISS]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence ISS]; GO:0003735 - structural constituent of ribosome [Evidence ISS] [Evidence IEA] GO_process : GO:0030490 - processing of 20S pre-rRNA [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence ISS]; GO:0000028 - ribosomal small subunit assembly and maintenance [Evidence ISS]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 product : ribosomal protein S14 protein_id : NP_065625.2

name	Cd74 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624770 GeneID:16149 MGI:96534
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0005770 - late endosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005771 - multivesicular body [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IMP] [Evidence IDA] GO_function : GO:0019955 - cytokine binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0019882 - antigen processing and presentation [Evidence IMP] [Evidence IDA]; GO:0019886 - antigen processing and presentation of exogenous peptide antigen via MHC class II [Evidence IMP]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IDA] [Evidence IMP]; GO:0006952 - defense response [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0016064 - immunoglobulin mediated immune response [Evidence IMP]; GO:0006886 - intracellular protein transport [Evidence IDA] [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence ISS]; GO:0045581 - negative regulation of T cell differentiation [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0045582 - positive regulation of T cell differentiation [Evidence IMP]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0001516 - prostaglandin biosynthesis [Evidence ISS]; GO:0006461 - protein complex assembly [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0043030 - regulation of macrophage activation [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Ia-associated invariant chain; dinucleotide microsatellite; MHC class II-associated invariant chain; class II-associated invariant chain peptide; HLA-DR-GAMMA; histocompatibility: class II antigens, gamma chain of; invariant polypeptide of major histocompatibility complex, class II antigen-associated product : CD74 antigen isoform 1 protein_id : NP_001036070.1

name	Cd74 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789020 GeneID:16149 MGI:96534
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0005770 - late endosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005771 - multivesicular body [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IMP] [Evidence IDA] GO_function : GO:0019955 - cytokine binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0019882 - antigen processing and presentation [Evidence IMP] [Evidence IDA]; GO:0019886 - antigen processing and presentation of exogenous peptide antigen via MHC class II [Evidence IMP]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IDA] [Evidence IMP]; GO:0006952 - defense response [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0016064 - immunoglobulin mediated immune response [Evidence IMP]; GO:0006886 - intracellular protein transport [Evidence IDA] [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence ISS]; GO:0045581 - negative regulation of T cell differentiation [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0045582 - positive regulation of T cell differentiation [Evidence IMP]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0001516 - prostaglandin biosynthesis [Evidence ISS]; GO:0006461 - protein complex assembly [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0043030 - regulation of macrophage activation [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Ia-associated invariant chain; dinucleotide microsatellite; MHC class II-associated invariant chain; class II-associated invariant chain peptide; HLA-DR-GAMMA; histocompatibility: class II antigens, gamma chain of; invariant polypeptide of major histocompatibility complex, class II antigen-associated product : CD74 antigen isoform 2 protein_id : NP_034675.1

name	Tcof1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755742 GeneID:21453 MGI:892003
definition	GO_component : GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0042790 - transcription of nuclear rRNA large RNA polymerase I transcript [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : treacle protein_id : NP_035682.1

name	Arsi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370328 CCDS:CCDS29275.1 GeneID:545260 MGI:2670959
definition	GO_function : GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : arylsulfatase I protein_id : NP_001033588.1

name	Camk2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28916677 CCDS:CCDS29276.1 GeneID:12322 MGI:88256
definition	GO_component : GO:0005954 - calcium- and calmodulin-dependent protein kinase complex [Evidence TAS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IMP]; GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP]; GO:0046777 - protein amino acid autophosphorylation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0046928 - regulation of neurotransmitter secretion [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; CaMK II; alpha-CaMKII product : calcium/calmodulin-dependent protein kinase II alpha isoform 2 protein_id : NP_803126.1

name	Camk2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753250 CCDS:CCDS29277.1 GeneID:12322 MGI:88256
definition	GO_component : GO:0005954 - calcium- and calmodulin-dependent protein kinase complex [Evidence TAS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IMP]; GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP]; GO:0046777 - protein amino acid autophosphorylation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0046928 - regulation of neurotransmitter secretion [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; CaMK II; alpha-CaMKII product : calcium/calmodulin-dependent protein kinase II alpha isoform 1 protein_id : NP_033922.1

name	Slc6a7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235730 CCDS:CCDS29278.1 GeneID:240332 MGI:2147363
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0005328 - neurotransmitter:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 protein_id : NP_958741.1

name	Cdx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46559386 CCDS:CCDS29279.1 GeneID:12590 MGI:88360
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : caudal type homeobox transcription factor 1 protein_id : NP_034010.2

name	Pdgfrb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679259 GeneID:18596 MGI:97531
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0050730 - regulation of peptidyl-tyrosine phosphorylation [Evidence IMP]; GO:0007165 - signal transduction [Evidence IDA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation note : PDGF beta chain; platelet-derived growth factor receptor beta variant 1 product : platelet derived growth factor receptor, beta polypeptide protein_id : NP_032835.1

name	LOC667578 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667578
definition	number : 1 pseudo : _no_value

name	LOC667578 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667578
definition	number : 2 pseudo : _no_value

name	LOC100042699 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042699
definition	number : 1 pseudo : _no_value

name	LOC100042699 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042699
definition	number : 2 pseudo : _no_value

name	LOC100042699 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042699
definition	number : 3 pseudo : _no_value

name	LOC100042699 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042699
definition	number : 4 pseudo : _no_value

name	LOC100042699 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042699
definition	number : 5 pseudo : _no_value

name	LOC667549 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269852 GeneID:667549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 260 ESTs, 2 Proteins product : similar to ribosomal protein L36a pseudo : _no_value transcript_id : XR_034441.1

name	LOC546714 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269784 GeneID:546714
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins product : hypothetical LOC546714 pseudo : _no_value transcript_id : XR_033767.1

name	LOC667619 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269787 GeneID:667619
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 5 Proteins product : similar to Rps16 protein pseudo : _no_value transcript_id : XR_033806.1

clone name	MSMg01-160C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456G23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-546O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409J07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-145E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056H01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-494M12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-216H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145B09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-419B05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-278D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354O13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-125M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475P03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-426A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062B18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-504K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306H17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-076K06.T7 (MSMg01no076_k06.b1)	MSMg01-076K06.TJ (MSMg01no076_k06.g1)
ACC	AG299168	AG299169
length	716	716
length of high quality (start - end)	540 (46 - 585)	565 (73 - 637)
definition	CHROMAT_FILE: MSMg01no076_k06.b1 PHD_FILE: MSMg01no076_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:41 2005	CHROMAT_FILE: MSMg01no076_k06.g1 PHD_FILE: MSMg01no076_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:41 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCATTCTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAATGTACCA CATTTTTTGTATCCATTCCTCTGTTGAGAGACATCTGGGTTCTTTCCAGC TTCTGGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGCATGTGTCC TTCTTACCAGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGC GGGATCCTCTGGTAGTACTATGTCCAATTTTCGGAGGAACCGCCAGACTG ATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGT GTTCCTCTTTCTCCACATCCTTGCCAGCATGTGCTGTCACCTGAATTTTT GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA TTTGCATTTCTCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGTTTC TCAGCCTTTCGGTATTCCTCGGGTGAGAATTCTTTGTTCATCTCTGAGCC CCATCTTTTAAGGTGGCTATTTGATTTTCTGGAGCCCACTCTCCTGATTC CTTTATATATATTGCATACTAGCCCCCTATCTGATTTAAGATAGGTAAAG ATCCTTTTCCACGACTTCCACCCCACAGTTATCAAATCAGACACCGTCCG CCTTCTCCTACTTTTC	CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXATGTAATAAGAAAAAGGCTTTCCTTCAT GTAACATGCAGTCCAGTGTGGCTGGTGGAGGAAAGGGGGCAATTAGGTTT GAAAAACAAAAAAAAGTGGTCAGCGCCAGGTCCTAATGAGGCTTTTTCTC ATCTGACCTTTGCACAGAGGCCCAAAGACTTCATGTACTTCACACACCAC TGAGCAGAATACAAAGCCACTCACCAAGTCAGATGAGACTTATTAGCACA AACAGAAAAAAAAAAATCTCAGAATGTATCTCCTACTGATACAGGCTCAA GGGCATCAGCATTGAATATTAACTACACTACATCAAAACAGCATTAGAGA TTGGTAAGACTGGGCTCCTGGTTGGACACATTTTCAGCCATTAACACAGA AGGATCAGAATGGCAAGCCCTGCTATGATTATTCCCCAGAGAGGACACAG CAGACACATGGCTTCAGCCTTCCTTTCCAGTAGCCCCACTGGCATTTCCA AAGGTAGAAAACACGAAGGGGAGCCTATAAAGGAAGTGTTTTTCCTTACA TGCTGTGGCTTGGCATGCTCCTGAATATAAACACTGCAGAGTGTGCATTC GATCAGTAAAGATAAGGAGTCTTTAGATTTTCAGATCCTTGATTGCTTGC TTCATCGTTAATTGCA
quality values	Open. Hide. 6 6 8 8 8 8 13 19 30 30 30 20 18 19 17 15 17 8 8 8 19 19 33 43 47 23 22 17 17 17 22 22 8 8 8 8 8 8 12 22 16 19 18 20 22 29 26 36 50 36 38 50 50 53 50 36 36 33 59 59 59 33 31 19 11 8 8 8 10 19 28 33 33 33 33 33 33 36 36 36 36 36 36 36 42 42 42 47 47 47 47 47 42 42 36 36 36 51 51 47 47 47 68 68 68 68 50 50 50 50 50 51 50 50 50 50 50 57 57 57 57 57 57 57 68 68 68 68 68 50 51 50 50 46 46 57 57 57 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 59 59 57 57 68 68 68 57 68 68 68 68 68 57 57 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 57 57 52 43 47 43 35 33 42 43 52 57 57 57 57 57 57 57 57 54 54 52 57 52 52 57 57 57 59 59 59 59 59 54 59 59 59 68 68 68 68 57 57 57 54 54 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 68 57 57 57 57 57 54 54 54 68 68 68 68 68 57 59 57 59 57 59 57 57 57 57 68 57 57 42 48 48 48 48 59 59 59 47 43 39 39 39 39 39 39 39 39 39 43 43 43 41 41 41 41 41 41 39 31 28 32 32 30 30 30 39 39 48 48 48 59 59 48 48 48 48 59 48 48 48 48 43 43 43 43 43 43 43 43 37 33 28 28 28 37 37 39 37 43 39 43 43 43 43 43 47 47 39 35 31 19 15 11 9 9 13 19 39 39 36 34 28 28 32 37 37 47 39 24 24 14 14 15 28 32 47 37 32 24 19 17 19 26 31 30 17 16 15 17 16 20 37 34 34 37 30 29 21 21 22 29 29 36 34 30 22 22 25 25 24 26 25 25 30 30 33 33 37 33 22 19 10 10 10 16 19 23 32 32 39 39 39 39 39 40 39 39 39 37 28 13 10 7 7 8 8 8 8 8 15 14 18 18 16 23 13 9 9 9 10 14 11 8 8 8 12 10 14 25 25 19 23 11 8 8 10 8 9 10 8 8 12 13 15 21 21 28 13 19 12 9 9 8 8 8 8 10 10 10 10 10 10 10 11 10 15 16 15 10 12 10 10 10 13 25 25 21 19 10 10 12 11 11 14 13 13 12 10 10 12 13 18 18 13 13 11 11 11 10 12 16 13 10 8 8 8 8 8 10 15 11 8 8 6 6 8 8 9 9 9 8 8 9 8 8 10 8 8 8 7 7 8 8 8 6	Open. Hide. 10 10 11 8 8 8 8 8 7 7 6 6 10 17 19 22 24 30 41 41 30 32 32 32 32 39 39 37 37 23 12 7 7 8 8 7 11 11 16 18 17 23 23 29 21 21 11 11 11 23 26 36 50 43 43 43 43 43 36 36 23 31 25 19 19 15 13 24 29 42 50 42 42 42 42 50 50 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 50 50 50 50 57 57 57 46 46 50 50 50 50 68 57 57 48 48 48 57 57 57 57 57 57 59 59 68 57 57 57 57 57 57 57 68 57 57 50 50 50 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 68 68 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 39 39 62 62 62 62 62 62 39 39 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 35 44 43 35 35 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 52 52 52 62 62 62 62 62 54 62 62 62 62 62 62 62 62 57 57 57 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 57 57 57 52 43 43 43 43 57 43 43 39 43 43 43 43 52 57 57 57 57 57 57 57 57 57 44 44 32 32 32 44 44 57 52 52 52 52 52 59 59 59 57 52 43 43 43 52 59 57 52 52 57 50 46 44 43 43 43 44 44 57 57 57 44 43 43 46 57 46 47 47 43 47 47 59 57 68 68 57 57 54 57 57 48 48 48 48 44 44 48 47 47 40 40 43 39 39 32 32 39 44 43 43 43 43 46 44 46 39 39 35 39 39 39 39 32 41 30 37 33 43 39 39 35 35 35 47 47 48 48 48 48 48 43 43 43 36 36 39 39 36 36 36 39 37 37 26 20 17 26 30 34 31 34 31 30 28 37 34 43 39 37 35 35 35 37 28 23 23 23 24 24 35 35 35 37 30 30 30 30 30 39 39 48 47 43 41 41 41 41 41 46 39 33 28 27 25 25 30 30 33 33 41 32 31 20 20 20 32 28 34 28 24 16 20 14 16 24 25 25 35 37 39 41 42 36 36 28 28 18 16 12 12 12 20 22 30 28 23 23 23 28 18 18 12 12 12 22 18 11 11 11 10 9 9 9 9 10 10 17 16 13 12 12 15 21 24 24 22 19 17 9 9 9 8 10 8 12 16 12 22 11 12 12 14 12 10 8 10 10 10 8 10 9 11 14 19 25 22 24 24 23 23 13 13 8 8 8 17 15 19 10 10 8 10 10 16 19 17 23 15 15 15

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no076_k06.g1 MSMg01no076_k06.g1 CHROMAT_FILE:
MSMg01no076_k06.g1 PHD_FILE: MSMg01no076_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:41 2005
         (565 letters)



>mm_chr18_60225100_60226062
          Length = 963

 Score = 1058 bits (547), Expect = 0.0
 Identities = 560/565 (99%), Gaps = 2/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtaataagaaaaaggctttccttcatgtaacatgcagtccagtgtggctggtggagga 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 atgtaataagaaaaaggctttccttcatgttacatgcagtccagtgtggctggtggagga 260

                                                                       
Query: 61  aagggggcaattaggtttgaaaaacaaaaaaaagtggtcagcgccaggtcctaatgaggc 120
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggggcaattaggtttgaaaa--aaaaaaaagtggtcagcgccaggtcctaatgaggc 318

                                                                       
Query: 121 tttttctcatctgacctttgcacagaggcccaaagacttcatgtacttcacacaccactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttttctcatctgacctttgcacagaggcccaaagacttcatgtacttcacacaccactg 378

                                                                       
Query: 181 agcagaatacaaagccactcaccaagtcagatgagacttattagcacaaacagaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcagaatacaaagccactcaccaagtcagatgagacttattagcacaaacagaaaaaaa 438

                                                                       
Query: 241 aaaatctcagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaatctcagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaa 498

                                                                       
Query: 301 ctacactacatcaaaacagcattagagattggtaagactgggctcctggttggacacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctacactacatcaaaacagcattagagattggtaagactgggctcctggttggacacatt 558

                                                                       
Query: 361 ttcagccattaacacagaaggatcagaatggcaagccctgctatgattattccccagaga 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 ttcagccattaacacagaaggatcagaatggtaagccctgctatgattattccccagaga 618

                                                                       
Query: 421 ggacacagcagacacatggcttcagccttcctttccagtagccccactggcatttccaaa 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 ggacacagcagacacatggcttcagccttcctttccagtagacccactggcatttccaaa 678

                                                                       
Query: 481 ggtagaaaacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtagaaaacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttg 738

                                    
Query: 541 gcatgctcctgaatataaacactgc 565
           |||||||||||||||||||||||||
Sbjct: 739 gcatgctcctgaatataaacactgc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space:   528915
Effective search space used:   528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information