BAC Information

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BAC

Clone NameMSMg01-078B04
Chromosome18 (Build37)
Map Location 83,049,153 - 83,049,342
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040871, B020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563
Downstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B04.T7 (MSMg01no078_b04.b1)MSMg01-078B04.TJ (MSMg01no078_b04.g1)
ACCAG299495AG299496
length708704
length of high quality
(start - end)
39 (77 - 115)200 (76 - 275)
definitionCHROMAT_FILE: MSMg01no078_b04.b1 PHD_FILE: MSMg01no078_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:17 2005CHROMAT_FILE: MSMg01no078_b04.g1 PHD_FILE: MSMg01no078_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAACTGACCGTGCCCTGGGGAGGAGGAGGATCAGTGAGAAA
TGGCAAGGGGGGAGGCGCACAGTATAGAATGGCAGTGATCTTGGATAGGT
GAGCATAGAGACCACATAGCGCCTTCCCACACCGTACATCGCCCTGGTTG
CTCCGAAATCTCACTGCTGTTTCTGCTTGCTTCCCCCTTGTTCTTTTTTC
CTCTTCGTATAGCATACGGTCCCTTTTGCCTCTTGTTACTTATTTCTTTA
TCTTTTTATGTCTCCCAGCTTTTTTTTTTCGCCCCCCCTCCACTCTTCCT
CTCTCGCTCTCTATTCTCTTTATCTTCTCCCCTTCCCGGCCTTACTCTCC
TCTCATTTCCTCCACTCCACCCCCCCCTCCTACTCCCTCCCTCATCTTTC
TTCCCCTTCTCTACGTCTCTCCCTCTTTCCCCTCCTCCACTCTATTCTTT
CCCCCCTGCTGCTACTTCTTCCTATATTTTTATCCCACCCTCCTCCTCTC
CCTCCCTCCCACCATCATCCTACTACTCTCGCTTCCTTCCTGGCCTTTTC
CTACTGTTTCCCTTCTATACGTCTCTCATTACATCAATCTCGTCTTGTCC
TTGCCTTCCTCTCTTCTTTCCTCATTCTATCCTCCTCCACTTCATTCCCT
CTCTCCCG
ATCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATGAGCAGGAAGGAAATTGAAG
GGCTGATGGGTAGGCAGAGATAGGGAGGAACCCAGCCCCCTAGCAGGGTG
CAGGTAGCCCCCCCCCCCCCCGTGGCTATCACACCCCCATGTGGCTTAGC
TTTGGTGTTCTCCCCACCCCTCCCCCCTTCTACCCTCCCCCTTTGCAAAA
GCTTGACTGTTGTTGTGTTGAACCTGAACGTTTGTTGAGTTGTGGAGTAG
TGATACTAAATTAAGCCCATACCAGCCTGTTCCTCAGGAAAGGTCAAGTT
GACTTGTTCTTGGATCCCCGACTTTAATGACTTCATGGGGAAACACATTG
AATCTGATGCCAGGCGTACAGCCATCCTGATCCAACTTCGATGTCTCCTG
ATCGCTGTCATAGAACGCAATCCGAACCTTACCTGAACACACCATGCTTG
CACCCTCTGCCTTGTCCCTTCCCCAACTTTCCTGAACACCCCCGTCCCTT
CCCCCTAAGCTGCCCTTACCTTCTCTTCCGCTTATCACCGAACACTTCCT
CTTGTGCTCCCTCCCGTCCTAATCGCCTCCCCTCCTCTACTGTTCGGCTC
ATCCCTTTCCCTACCCTCCAACCCAAACAATCCCCGGATATACACCTGAC
AATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b04.g1 MSMg01no078_b04.g1 CHROMAT_FILE:
MSMg01no078_b04.g1 PHD_FILE: MSMg01no078_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:17 2005
         (200 letters)



>mm_chr18_83048946_83049545
          Length = 600

 Score =  319 bits (165), Expect = 6e-92
 Identities = 186/197 (94%), Gaps = 7/197 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgagcaggaaggaaattgaagggctgatgggtaggcagagatagggaggaacccag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctgatgagcaggaaggaaactgaagggctgatgggtaggcagagatagggaggaacccag 267

                                                                       
Query: 61  ccccctagcagggtgcaggtagccccccccccccccgtggctatcacacccccatgtggc 120
           |||||||||||||||||||||| ||||||       ||||||||||||||||||||||||
Sbjct: 268 ccccctagcagggtgcaggtaggcccccc-------gtggctatcacacccccatgtggc 320

                                                                       
Query: 121 ttagctttggtgttctccccacccctccccccttctaccctccccctttgcaaaagcttg 180
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 321 ttagctttggtgttctccccaccccttcccccttctaccctacccctttgcaaaagcttg 380

                            
Query: 181 actgttgttgtgttgaa 197
           |||||||||||||||||
Sbjct: 381 actgttgttgtgttgaa 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)