BAC Information

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BAC

Clone NameMSMg01-078C17
Chromosome18 (Build37)
Map Location 87,846,314 - 87,846,683
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C17.T7 (MSMg01no078_c17.b1)MSMg01-078C17.TJ (MSMg01no078_c17.g1)
ACCAG299568AG299569
length720723
length of high quality
(start - end)
373 (40 - 412)547 (71 - 617)
definitionCHROMAT_FILE: MSMg01no078_c17.b1 PHD_FILE: MSMg01no078_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:24 2005CHROMAT_FILE: MSMg01no078_c17.g1 PHD_FILE: MSMg01no078_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATATCTATCTCGTATATAATGAATATCATAGGCTTATTCTGGTATAAAGA
GAAGGCTGATTTTATGAGAATAATTAAGGTGTTGCACATGCTTCTAACAC
TTCTTTATAATAAGCATGCTTCCAGAAAGAGAGAGTACTGAAGTGTATGT
AAAAACCTTTCCTAGTTCATGATACAGAATTTAACAATACAGGCTAGACA
TAAAGTGCTAATTATAAGTTCAACAACCTCACTTTTGTCATTTTAATTCT
TAATTTCTTTTACATTTTATGTTGTAATTTTAATATTGACCAATTTTGTA
AAGTTCGTTTGCATAACCACATATTGATCTGTAAGCAGAGTGAACGTTGT
AGCTTGTTGGTGAGTGCTGCTGGTTGATTCACTGTAATTTTGGATTCTGT
ACACCTCGTGCTGAGCACTGAGGTATTTGGTACACTTATCATACCTGTTG
GATGCAGCTTCGTCTATGAGGCTTGATCTTTACAACTGTTAAAAAAAAAG
ATGCTAATGTCATAATGAATAACACCACATAAGAGCAAAACTGAAAGTGA
AATGTATGCCTCTGGAGTTCATATTAAGTTGTGAATTTTATATTCAGTCA
ACTCTTCACAATGGTCTGATCCATCCCCTGCAATATGAACTGTGTAGAAA
AATGTATCTTGGTATGGCAA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATATTCCATTTCACAATTCTCTATGCCTC
GAAAGCAGAGTAAGCTGTATAGAATTACACAGGAGAAATCTCTATTTTTT
CCAAAATTCAGTAAAGTGCTAACCAGCCAGTTTGCAACTGGGGATCAGTT
GTTGTGAATAGCAAAACCAAAATTTGATCTCTTATGAGTATTGAAATATT
TTATCCCGCCTTTTATATTAAACAATGAAATGTATTCTGAAGTCTTATTG
TATTAAGTTATACAAGCTGTCCTGAATTTTGGTCAAATATTATTTGGAAA
TAACATATGCTAGCAATTCAACTAACAAACTGGCATAAAAAATGAATTGA
TGGAAATGTCTACACCTGCTAGAGATGTAATTCAGAATTTGAAAATGAAC
TTAAAGTAGGTCCAAATAGAAGCAAAAGAAGATGTATTTAAATGATTTTA
GGAGGCCTTTTAATTTTCTAAAAATAAATTATTTAAATGCACCTTTGAAA
CAATGATTAGAAAAATGTTAAATATATTTCATATGAAGATAAATTATCTT
TCTAAAATCTATTCAAAGTTATAAGAAGAAAAGAAATTTTAAAATAGGAT
TTGATGCACAACTAACAAAGCAAAGCATTTATCTAAAAATGCCAGGAATT
GCCTTTAAACAGAATCTTCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c17.b1 MSMg01no078_c17.b1 CHROMAT_FILE:
MSMg01no078_c17.b1 PHD_FILE: MSMg01no078_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:24 2005
         (373 letters)



>mm_chr18_87846110_87846883
          Length = 774

 Score =  656 bits (339), Expect = 0.0
 Identities = 363/371 (97%), Gaps = 3/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatatctatctcgtatataatgaatatcataggcttattctggtataaagagaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattctatatctatct-gtatataatgaatatcataggcttattctggtaaaaagagaa 263

                                                                       
Query: 65  ggctgattttatgagaataattaaggt-gttgcacatgcttctaacacttctttataata 123
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 gactgattttatgagaataattaaggttgttgcacatgcttctaacacttctttataata 323

                                                                       
Query: 124 agcatgcttccagaaagagagagtactgaagtgtatgtaaaaacctttcctagttcatga 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 agcatgcttccagaaagagagagtactgaagtgtatgtaaaaacctttcctatttcatga 383

                                                                       
Query: 184 tacagaatttaacaatacaggctagacataaagtgctaattataagttcaacaacctcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacagaatttaacaatacaggctagacataaagtgctaattataagttcaacaacctcac 443

                                                                       
Query: 244 ttttgtcattttaattcttaattt-cttttacattttatgttgtaattttaatattgacc 302
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 444 ttttgtcattttaattcttaattttcttttacattttatgttgttattttaatattgacc 503

                                                                       
Query: 303 aattttgtaaagttcgtttgcataaccacatattgatctgtaagcagagtgaacgttgta 362
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aattttgtaaagtttgtttgcataaccacatattgatctgtaagcagagtgaacgttgta 563

                      
Query: 363 gcttgttggtg 373
           |||||||||||
Sbjct: 564 gcttgttggtg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space:   278460
Effective search space used:   278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)