Query= MSMg01no078_l01.b1 MSMg01no078_l01.b1 CHROMAT_FILE:
MSMg01no078_l01.b1 PHD_FILE: MSMg01no078_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
(346 letters)
>mm_chr18_16454038_16454783
Length = 746
Score = 603 bits (312), Expect = e-177
Identities = 341/358 (95%), Gaps = 13/358 (3%)
Strand = Plus / Minus
Query: 1 attcacttttctctccgcatttgtcacatttgtaaagcttaagattccactcccaaaagg 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attcacttttct-ttggcatttgtcacatttgtaaagcttaagattccactcccaaaagg 560
Query: 61 c------------gggattggcaagaaaactctctataggtagatagtgaaatatctggc 108
| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 caggcagggtcatgggattggcaagaaaactctccataggtagatagtgaaatatctggc 500
Query: 109 agggattttaacttatttcagtgaagccaaaagctggtatttacacattaccttaatgct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agggattttaacttatttcagtgaagccaaaagctggtatttacacattaccttaatgct 440
Query: 169 tgactggagtagatattcttagtatacaattataacactaagttgtcaattaaatgtgac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgactggagtagatattcttagtatacaattataacactaagttgtcaattaaatgtgac 380
Query: 229 aaagatttctccactggaattgtactggaaaacaaggtaatcccaacggcacaggcaatc 288
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 379 aaagatttctccactggaattgtactggaaaacaaggtaatcccaatggcacaggcaatc 320
Query: 289 ctattaagttagacatccaaagatcattttccttccatgcctttcacacactggagtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctattaagttagacatccaaagatcattttccttccatgcctttcacacactggagtg 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_l01.g1 MSMg01no078_l01.g1 CHROMAT_FILE:
MSMg01no078_l01.g1 PHD_FILE: MSMg01no078_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:06 2005
(378 letters)
>mm_chr18_16288652_16289429
Length = 778
Score = 700 bits (362), Expect = 0.0
Identities = 374/378 (98%)
Strand = Plus / Plus
Query: 1 tgtaacatgtcacattaatgaacctatagaagattaaagtgagtgaaaggtgctattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaacatgtcacattaatgaacctatagaagattaaagtgagtgaaaggtgctattcat 260
Query: 61 gaaaaagacaaatgctgcagcttcactcatctctcattatctaaagttgtgaaatttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaagacaaatgctgcagcttcactcatctctcattatctaaagttgtgaaatttata 320
Query: 121 gaatcaaggactcttaatagtgagtggagcaaaacattttaattaacaggcataaagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcaaggactcttaatagtgagtggagcaaaacattttaattaacaggcataaagttc 380
Query: 181 cagctaggcaggagaagtgggttctacgacctctcacaagctgcactgtagggtacagac 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 381 cagctaggcaggagaagtgggttctacgaccgctcacaagctgcactgtagggcacagac 440
Query: 241 aaaaatttgttaagaaagtagatacaatattacaatggctacttcagcttgtttctttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatttgttaagaaagtagatacaatattacaatggctacttcagcttgtttctttgg 500
Query: 301 accatttgcttggaaaattgctttccagcctttcactctgaggtagcgtctgtcattttc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 accatttgcttggaaaattgctttccagcctttcactctgaggtagtgtctgtcattttc 560
Query: 361 cttgatgtgcatttcccg 378
||||| ||||||||||||
Sbjct: 561 cttgaggtgcatttcccg 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
